Gene Gene information from NCBI Gene database.
Entrez ID 1352
Gene name Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10
Gene symbol COX10
Synonyms (NCBI Gene)
MC4DN3
Chromosome 17
Chromosome location 17p12
Summary Cytochrome c oxidase (COX), the terminal component of the mitochondrial respiratory chain, catalyzes the electron transfer from reduced cytochrome c to oxygen. This component is a heteromeric complex consisting of 3 catalytic subunits encoded by mitochond
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs104894555 C>A Pathogenic Missense variant, coding sequence variant
rs104894556 C>G,T Pathogenic Missense variant, coding sequence variant
rs104894557 A>G,T Pathogenic Missense variant, coding sequence variant
rs104894560 C>A Pathogenic Missense variant, coding sequence variant
rs113058506 C>A,T Conflicting-interpretations-of-pathogenicity, benign-likely-benign Coding sequence variant, synonymous variant, missense variant
miRNA miRNA information provided by mirtarbase database.
444
miRTarBase ID miRNA Experiments Reference
MIRT020193 hsa-miR-130b-3p Sequencing 20371350
MIRT027567 hsa-miR-98-5p Microarray 19088304
MIRT031141 hsa-miR-19b-3p Sequencing 20371350
MIRT051700 hsa-let-7e-5p CLASH 23622248
MIRT076030 hsa-miR-519a-3p PAR-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
37
GO ID Ontology Definition Evidence Reference
GO:0000266 Process Mitochondrial fission IEA
GO:0002521 Process Leukocyte differentiation IEA
GO:0004311 Function Geranylgeranyl diphosphate synthase activity IGI 8078902
GO:0004311 Function Geranylgeranyl diphosphate synthase activity TAS 8078902
GO:0004659 Function Prenyltransferase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602125 2260 ENSG00000006695
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q12887
Protein name Protoheme IX farnesyltransferase, mitochondrial (EC 2.5.1.141) (Heme O synthase)
Protein function Converts protoheme IX and farnesyl diphosphate to heme O.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01040 UbiA 168 418 UbiA prenyltransferase family Family
Sequence
MAASPHTLSSRLLTGCVGGSVWYLERRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMY
VTQLNRSHNQQVRPKPEPVASPFLEKTSSGQAKAEIYEMRPLSPPSLSLSRKPNEKELIE
LEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILARLSKIKLTALVVSTTAAGFALA
PGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA
TCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGW
TAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPGLCRRVALRH
CLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRLFFCSLWH
LP
LLLLLMLTCKRPSGGGDAGPPPS
Sequence length 443
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Oxidative phosphorylation
Porphyrin metabolism
Metabolic pathways
Biosynthesis of cofactors
Thermogenesis
  Heme biosynthesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Mitochondrial complex IV deficiency, nuclear type 1 Likely pathogenic; Pathogenic rs104894557, rs1597527946 RCV000995747
RCV000995746
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Mitochondrial complex IV deficiency, nuclear type 3 Likely pathogenic; Pathogenic rs1425392070, rs104894560, rs104894555, rs104894556, rs104894557, rs387906383, rs2508434662 RCV005005942
RCV000007956
RCV000007958
RCV000007959
RCV000007960
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Fanconi syndrome Fanconi syndrome HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 12928484
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Brain Ischemia Brain ischemia Pubtator 31821324 Associate
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 32190687, 36463760 Associate
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
CARDIOMYOPATHY, INFANTILE HYPERTROPHIC Cardiomyopathy BEFREE 12928484
★☆☆☆☆
Found in Text Mining only
Central nervous system demyelination Central Nervous System Demyelination HPO_DG
★☆☆☆☆
Found in Text Mining only
Charcot-Marie-Tooth Disease Charcot-Marie-Tooth Disease BEFREE 9403059
★☆☆☆☆
Found in Text Mining only