Gene Gene information from NCBI Gene database.
Entrez ID 132884
Gene name EvC ciliary complex subunit 2
Gene symbol EVC2
Synonyms (NCBI Gene)
LBNWAD
Chromosome 4
Chromosome location 4p16.2
Summary This gene encodes a protein that functions in bone formation and skeletal development. Mutations in this gene, as well as in a neighboring gene that lies in a head-to-head configuration, cause Ellis-van Creveld syndrome, an autosomal recessive skeletal dy
SNPs SNP information provided by dbSNP.
98
SNP ID Visualize variation Clinical significance Consequence
rs35103377 AA>-,A,AAA,AAAA,AAAAA Uncertain-significance, benign, conflicting-interpretations-of-pathogenicity Intron variant
rs73198165 G>A,T Benign-likely-benign, pathogenic Stop gained, synonymous variant, coding sequence variant, non coding transcript variant
rs137852924 G>A Pathogenic Stop gained, coding sequence variant, 5 prime UTR variant, non coding transcript variant
rs137852925 G>A Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs137852926 A>C Pathogenic Missense variant, coding sequence variant, 5 prime UTR variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
42
miRTarBase ID miRNA Experiments Reference
MIRT646805 hsa-miR-188-5p HITS-CLIP 23824327
MIRT646804 hsa-miR-6866-3p HITS-CLIP 23824327
MIRT646803 hsa-miR-1245b-3p HITS-CLIP 23824327
MIRT646802 hsa-miR-4768-3p HITS-CLIP 23824327
MIRT646801 hsa-miR-6729-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
17
GO ID Ontology Definition Evidence Reference
GO:0005634 Component Nucleus HDA 21630459
GO:0005634 Component Nucleus IEA
GO:0005634 Component Nucleus ISS
GO:0005737 Component Cytoplasm IEA
GO:0005856 Component Cytoskeleton IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607261 19747 ENSG00000173040
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q86UK5
Protein name Limbin (Ellis-van Creveld syndrome protein 2) (EVC2)
Protein function Component of the EvC complex that positively regulates ciliary Hedgehog (Hh) signaling. Plays a critical role in bone formation and skeletal development. May be involved in early embryonic morphogenesis.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12297 EVC2_like 237 660 Ellis van Creveld protein 2 like protein Family
Tissue specificity TISSUE SPECIFICITY: Found in the heart, placenta, lung, liver, skeletal muscle, kidney and pancreas. {ECO:0000269|PubMed:12468274}.
Sequence
MDPSGSRGRPTWVLAGGLLAVALALGGRGCLGASSRPRWRPLGAQPPRDPQVAPRSGPGL
RIPPGRSGAGPESSTQDLPCMIWPKVECCHFKTAVEAPLGMKLDKKMEVFIPLSTSAASS
GPWAHSLFAFIPSWPKKNLFKRESPITHRLYGDISREVQGTSENGVIFQKCALVSGSSEA
QTARIWLLVNNTKTTSSANLSELLLLDSIAGLTIWDSVGNRTSEGFQAFSKKFLQVGDAF
AVSYAATLQAGDLGNGESLKLPAQLTFQSSSRNRTQLKVLFSITAEENVTVLPHHGLHAA
GFFIAFLLSLVLTWAALFLMVRYQCLKGNMLTRHRVWQYESKLEPLPFTSADGVNEDLSL
NDQMIDILSSEDPGSMLQALEELEIATLNRADADLEACRTQISKDIIALLLKNLTSSGHL
SPQVERKMSAVFKKQFLLLENEIQEEYDRKMVALTAECDLETRKKMENQYQREMMAMEEA
EELLKRAGERSAVECSNLLRTLHGLEQEHLRKSLALQQEEDFAKAHRQLAVFQRNELHSI
FFTQIKSAIFKGELKPEAAKMLLQNYSKIQENVEELMDFFQASKRYHLSKRFGHREYLVQ
NLQSSETRVQGLLSTAAAQLTHLIQKHERAGYLDEDQMEMLLERAQTEVFSIKQKLDNDL

KQEKKKLHQKLITKRRRELLQKHREQRREQASVGEAFRTVEDAGQYLHQKRSLMEEHGAT
LEELQERLDQAALDDLRTLTLSLFEKATDELRRLQNSAMTQELLKRGVPWLFLQQILEEH
GKEMAARAEQLEGEERDRDQEGVQSVRQRLKDDAPEAVTEEQAELRRWEHLIFMKLCSSV
FSLSEEELLRMRQEVHGCFAQMDRSLALPKIRARVLLQQFQTAWREAEFVKLDQAVAAPE
LQQQSKVRKSRSKSKSKGELLKKCIEDKIHLCEEQASEDLVEKVRGELLRERVQRMEAQE
GGFAQSLVALQFQKASRVTETLSAYTALLSIQDLLLEELSASEMLTKSACTQILESHSRE
LQELERKLEDQLVQQEAAQQQQALASWQQWVADGPGILNEPGEVDSERQVSTVLHQALSK
SQTLLEQHQQCLREEQQNSVVLEDLLENMEADTFATLCSQELRLASYLARMAMVPGATLR
RLLSVVLPTASQPQLLALLDSATERHVDHAAESDGGAEQADVGRRRKHQSWWQALDGKLR
GDLISRGLEKMLWARKRKQSILKKTCLPLRERMIFSGKGSWPHLSLEPIGELAPVPIVGA
ETIDLLNTGEKLFIFRNPKEPEISLHVPPRKKKNFLNAKKAMRALGMD
Sequence length 1308
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Hedgehog signaling pathway   Hedgehog 'on' state
Activation of SMO
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
32
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Curry-Hall syndrome Likely pathogenic; Pathogenic rs2108833043, rs2108851273, rs1294715119, rs145425340, rs765076649, rs1367694162, rs2108847232, rs2108851802, rs2108863739, rs2108895910, rs1560208675, rs2151739558, rs2151750076, rs1577093161, rs1560121645
View all (204 more)
RCV001377221
RCV001379523
RCV001379931
RCV001383513
RCV001391002
View all (226 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ellis-van Creveld syndrome Likely pathogenic; Pathogenic rs2108833043, rs2108851273, rs1294715119, rs145425340, rs765076649, rs1367694162, rs2108847232, rs2108851802, rs2108863739, rs2108895910, rs1560208675, rs2151739558, rs2151750076, rs1577093161, rs1484464278
View all (258 more)
RCV001377221
RCV001379523
RCV001379931
RCV001383513
RCV001391002
View all (284 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
EVC2-related disorder Pathogenic; Likely pathogenic rs750396637, rs200300612, rs376133710, rs761707323, rs763363403, rs999964757 RCV004751334
RCV003922532
RCV003979919
RCV003915444
RCV003420174
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Familial cancer of breast Pathogenic rs769864196 RCV005901105
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ACROFACIAL DYSOSTOSIS, WEYERS TYPE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired cubitus valgus Cubitus valgus HPO_DG
★☆☆☆☆
Found in Text Mining only
Acrofacial dysostosis, Weyers type Acrofacial Dysostosis Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alveolar ridge abnormality Alveolar Ridge Abnormality HPO_DG
★☆☆☆☆
Found in Text Mining only
Amelogenesis imperfecta local hypoplastic form Amelogenesis imperfecta Pubtator 36672825 Associate
★☆☆☆☆
Found in Text Mining only
Anodontia Anodontia Pubtator 36672825 Associate
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathies BEFREE 28027321
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathy Pubtator 33875766 Associate
★☆☆☆☆
Found in Text Mining only