Gene Gene information from NCBI Gene database.
Entrez ID 129880
Gene name Bardet-Biedl syndrome 5
Gene symbol BBS5
Synonyms (NCBI Gene)
-
Chromosome 2
Chromosome location 2q31.1
Summary This gene encodes a protein that has been directly linked to Bardet-Biedl syndrome. The primary features of this syndrome include retinal dystrophy, obesity, polydactyly, renal abnormalities and learning disabilities. Experimentation in non-human eukaryot
SNPs SNP information provided by dbSNP.
22
SNP ID Visualize variation Clinical significance Consequence
rs121908581 G>A Pathogenic Coding sequence variant, missense variant
rs121908582 A>G Pathogenic Coding sequence variant, missense variant
rs137853921 A>G Conflicting-interpretations-of-pathogenicity, likely-pathogenic Coding sequence variant, missense variant
rs143191074 A>G Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs179363897 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
546
miRTarBase ID miRNA Experiments Reference
MIRT631876 hsa-miR-508-5p HITS-CLIP 23824327
MIRT664456 hsa-miR-1273g-3p HITS-CLIP 23824327
MIRT631875 hsa-miR-6849-3p HITS-CLIP 23824327
MIRT631874 hsa-miR-939-3p HITS-CLIP 23824327
MIRT631873 hsa-miR-766-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0001947 Process Heart looping ISS
GO:0005515 Function Protein binding IPI 16327777, 17574030, 18762586, 20080638, 22500027, 24550735, 24939912, 25416956, 25552655, 27173435, 29039417, 33144677, 33961781
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol TAS
GO:0005856 Component Cytoskeleton IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603650 970 ENSG00000163093
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N3I7
Protein name BBSome complex member BBS5 (Bardet-Biedl syndrome 5 protein)
Protein function The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This cilio
PDB 6XTB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07289 BBL5 7 339 Bardet-Biedl syndrome 5 protein Family
Sequence
Sequence length 341
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    BBSome-mediated cargo-targeting to cilium
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Bardet-Biedl syndrome Pathogenic; Likely pathogenic rs1471916487, rs2105291750, rs373396081, rs1574339529, rs2105297751, rs2105300418, rs2105304338, rs2105297825, rs1172161975, rs2468033187, rs756684256, rs786205636, rs1285925896, rs759233586, rs2105290053
View all (26 more)
RCV002546737
RCV001378765
RCV001383653
RCV001866093
RCV001925601
View all (37 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome 5 Pathogenic; Likely pathogenic rs1471916487, rs373396081, rs1683644409, rs1574339529, rs2105303591, rs536117380, rs1172161975, rs786205636, rs1285925896, rs2468033258, rs587777828, rs767221160, rs121908581, rs121908582, rs2468041599
View all (15 more)
RCV001335471
RCV005023140
RCV001526710
RCV001780411
RCV001808003
View all (27 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BBS5-related disorder Pathogenic; Likely pathogenic rs2105300418, rs1238632042, rs1054138918, rs1272140892 RCV004753416
RCV003403181
RCV003392526
RCV004753002
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone dystrophy Likely pathogenic rs1238632042 RCV000504629
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bardet-Biedl syndrome 1 Uncertain significance; Conflicting classifications of pathogenicity ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Cervical cancer Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Age related macular degeneration Age-related macular degeneration HPO_DG
★☆☆☆☆
Found in Text Mining only
Bardet-Biedl Syndrome Bardet-Biedl Syndrome BEFREE 11179009, 12107442, 15137946, 16723438, 30850397, 31760295, 9888993
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome LHGDN 15137946, 18203199
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome CLINVAR_DG 15137946, 26325687, 30614526, 30718709
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome Bardet-Biedl Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome 1 (disorder) Bardet-Biedl Syndrome GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
BARDET-BIEDL SYNDROME 5 Bardet-Biedl Syndrome UNIPROT_DG 15137946, 18203199, 21344540
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 5 Bardet-Biedl Syndrome GENOMICS_ENGLAND_DG 15137946, 18203199
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 5 Bardet-Biedl Syndrome BEFREE 16723438, 26867008
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 5 Bardet-Biedl Syndrome CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)