Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	1266
Gene name	Calponin 3
Gene symbol	CNN3
Synonyms (NCBI Gene)	-
Chromosome	1
Chromosome location	1p21.3
Summary	This gene encodes a protein with a markedly acidic C terminus; the basic N-terminus is highly homologous to the N-terminus of a related gene, CNN1. Members of the CNN gene family all contain similar tandemly repeated motifs. This encoded protein is associ

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miRTarBase ID	miRNA	Experiments	Reference
MIRT003526	hsa-miR-1-3p	Luciferase reporter assay	20144220
MIRT004059	hsa-miR-7-5p	Microarray	19073608
MIRT019744	hsa-miR-375	Microarray	20215506
MIRT022443	hsa-miR-124-3p	Microarray	18668037
MIRT023223	hsa-miR-122-5p	Proteomics	21750653
MIRT003526	hsa-miR-1-3p	Proteomics;Microarray	18668037
MIRT004059	hsa-miR-7-5p	Microarray;Other	19073608
MIRT051326	hsa-miR-15a-5p	CLASH	23622248
MIRT051220	hsa-miR-16-5p	CLASH	23622248
MIRT050000	hsa-miR-28-5p	CLASH	23622248
MIRT039532	hsa-miR-652-3p	CLASH	23622248
MIRT039532	hsa-miR-652-3p	CLASH	23622248
MIRT437699	hsa-miR-27a-3p	MicroarrayqRT-PCR	22815788
MIRT437708	hsa-miR-27b-3p	MicroarrayqRT-PCR	22815788
MIRT628309	hsa-miR-561-3p	HITS-CLIP	23824327
MIRT628308	hsa-miR-337-3p	HITS-CLIP	23824327
MIRT628307	hsa-miR-202-5p	HITS-CLIP	23824327
MIRT628306	hsa-miR-3685	HITS-CLIP	23824327
MIRT628305	hsa-miR-384	HITS-CLIP	23824327
MIRT628304	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT004059	hsa-miR-7-5p	PAR-CLIP	21572407
MIRT548769	hsa-miR-142-3p	PAR-CLIP	21572407
MIRT548768	hsa-miR-548c-3p	PAR-CLIP	21572407
MIRT548767	hsa-miR-100-3p	PAR-CLIP	21572407
MIRT548766	hsa-miR-888-5p	PAR-CLIP	21572407
MIRT548765	hsa-miR-577	PAR-CLIP	21572407
MIRT548764	hsa-miR-4476	PAR-CLIP	21572407
MIRT548763	hsa-miR-6876-5p	PAR-CLIP	21572407
MIRT548762	hsa-miR-4255	PAR-CLIP	21572407
MIRT548761	hsa-miR-633	PAR-CLIP	21572407
MIRT548760	hsa-miR-651-5p	PAR-CLIP	21572407
MIRT628309	hsa-miR-561-3p	HITS-CLIP	23824327
MIRT628308	hsa-miR-337-3p	HITS-CLIP	23824327
MIRT628307	hsa-miR-202-5p	HITS-CLIP	23824327
MIRT628306	hsa-miR-3685	HITS-CLIP	23824327
MIRT628305	hsa-miR-384	HITS-CLIP	23824327
MIRT628304	hsa-miR-4668-5p	HITS-CLIP	23824327
MIRT004059	hsa-miR-7-5p	PAR-CLIP	21572407
MIRT548769	hsa-miR-142-3p	PAR-CLIP	21572407
MIRT548768	hsa-miR-548c-3p	PAR-CLIP	21572407
MIRT548767	hsa-miR-100-3p	PAR-CLIP	21572407
MIRT548766	hsa-miR-888-5p	PAR-CLIP	21572407
MIRT548765	hsa-miR-577	PAR-CLIP	21572407
MIRT548764	hsa-miR-4476	PAR-CLIP	21572407
MIRT548763	hsa-miR-6876-5p	PAR-CLIP	21572407
MIRT548762	hsa-miR-4255	PAR-CLIP	21572407
MIRT548761	hsa-miR-633	PAR-CLIP	21572407
MIRT548760	hsa-miR-651-5p	PAR-CLIP	21572407
MIRT899897	hsa-miR-128	CLIP-seq
MIRT899898	hsa-miR-144	CLIP-seq
MIRT899899	hsa-miR-182	CLIP-seq
MIRT899900	hsa-miR-1827	CLIP-seq
MIRT899901	hsa-miR-27a	CLIP-seq
MIRT899902	hsa-miR-27b	CLIP-seq
MIRT899903	hsa-miR-3126-5p	CLIP-seq
MIRT899904	hsa-miR-3127-3p	CLIP-seq
MIRT899905	hsa-miR-3922-5p	CLIP-seq
MIRT899906	hsa-miR-4259	CLIP-seq
MIRT899907	hsa-miR-4419a	CLIP-seq
MIRT899908	hsa-miR-4470	CLIP-seq
MIRT899909	hsa-miR-4510	CLIP-seq
MIRT899910	hsa-miR-4666-3p	CLIP-seq
MIRT899911	hsa-miR-4715-5p	CLIP-seq
MIRT899912	hsa-miR-4766-3p	CLIP-seq
MIRT899913	hsa-miR-513a-5p	CLIP-seq
MIRT899914	hsa-miR-888	CLIP-seq
MIRT1546532	hsa-miR-338-5p	CLIP-seq
MIRT1546533	hsa-miR-3942-5p	CLIP-seq
MIRT1546534	hsa-miR-4703-5p	CLIP-seq
MIRT1546535	hsa-miR-651	CLIP-seq
MIRT1546536	hsa-miR-7	CLIP-seq
MIRT1546533	hsa-miR-3942-5p	CLIP-seq
MIRT1546534	hsa-miR-4703-5p	CLIP-seq
MIRT899897	hsa-miR-128	CLIP-seq
MIRT899898	hsa-miR-144	CLIP-seq
MIRT2202673	hsa-miR-1911	CLIP-seq
MIRT899901	hsa-miR-27a	CLIP-seq
MIRT899902	hsa-miR-27b	CLIP-seq
MIRT2202674	hsa-miR-3123	CLIP-seq
MIRT2202675	hsa-miR-3682-5p	CLIP-seq
MIRT899913	hsa-miR-513a-5p	CLIP-seq
MIRT2202676	hsa-miR-570	CLIP-seq
MIRT2202677	hsa-miR-618	CLIP-seq
MIRT2386291	hsa-miR-105	CLIP-seq
MIRT899897	hsa-miR-128	CLIP-seq
MIRT899898	hsa-miR-144	CLIP-seq
MIRT2202673	hsa-miR-1911	CLIP-seq
MIRT899901	hsa-miR-27a	CLIP-seq
MIRT899902	hsa-miR-27b	CLIP-seq
MIRT2202674	hsa-miR-3123	CLIP-seq
MIRT899904	hsa-miR-3127-3p	CLIP-seq
MIRT2427385	hsa-miR-34b	CLIP-seq
MIRT2202675	hsa-miR-3682-5p	CLIP-seq
MIRT2427386	hsa-miR-4427	CLIP-seq
MIRT2427387	hsa-miR-4643	CLIP-seq
MIRT2427388	hsa-miR-466	CLIP-seq
MIRT2427389	hsa-miR-4719	CLIP-seq
MIRT2427390	hsa-miR-4728-3p	CLIP-seq
MIRT2427391	hsa-miR-4789-3p	CLIP-seq
MIRT899913	hsa-miR-513a-5p	CLIP-seq
MIRT1546535	hsa-miR-651	CLIP-seq
MIRT1546536	hsa-miR-7	CLIP-seq
MIRT2386291	hsa-miR-105	CLIP-seq
MIRT2202673	hsa-miR-1911	CLIP-seq
MIRT2505642	hsa-miR-1972	CLIP-seq
MIRT2202674	hsa-miR-3123	CLIP-seq
MIRT2505643	hsa-miR-3156-5p	CLIP-seq
MIRT2427385	hsa-miR-34b	CLIP-seq
MIRT2505644	hsa-miR-3591-3p	CLIP-seq
MIRT2427387	hsa-miR-4643	CLIP-seq
MIRT2505645	hsa-miR-4650-5p	CLIP-seq
MIRT2427388	hsa-miR-466	CLIP-seq
MIRT2505646	hsa-miR-4711-5p	CLIP-seq
MIRT2505647	hsa-miR-4714-5p	CLIP-seq
MIRT2505648	hsa-miR-4717-5p	CLIP-seq
MIRT2427389	hsa-miR-4719	CLIP-seq
MIRT2505649	hsa-miR-4766-5p	CLIP-seq
MIRT2427391	hsa-miR-4789-3p	CLIP-seq
MIRT2386291	hsa-miR-105	CLIP-seq
MIRT2505642	hsa-miR-1972	CLIP-seq
MIRT2427385	hsa-miR-34b	CLIP-seq
MIRT2505644	hsa-miR-3591-3p	CLIP-seq
MIRT2427387	hsa-miR-4643	CLIP-seq
MIRT2505645	hsa-miR-4650-5p	CLIP-seq
MIRT2427388	hsa-miR-466	CLIP-seq
MIRT2505646	hsa-miR-4711-5p	CLIP-seq
MIRT2505648	hsa-miR-4717-5p	CLIP-seq
MIRT2427389	hsa-miR-4719	CLIP-seq
MIRT899912	hsa-miR-4766-3p	CLIP-seq
MIRT2427391	hsa-miR-4789-3p	CLIP-seq
MIRT2678349	hsa-miR-548p	CLIP-seq

Show/Hide all (13)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003779	Function	Actin binding	IEA
GO:0005516	Function	Calmodulin binding	IEA
GO:0005829	Component	Cytosol	IDA
GO:0005912	Component	Adherens junction	HDA	25468996
GO:0005925	Component	Focal adhesion	HDA	21423176
GO:0007015	Process	Actin filament organization	IBA
GO:0015629	Component	Actin cytoskeleton	IBA
GO:0015629	Component	Actin cytoskeleton	IDA
GO:0030855	Process	Epithelial cell differentiation	IEP	21492153
GO:0031032	Process	Actomyosin structure organization	IEA
GO:0051015	Function	Actin filament binding	IBA
GO:0098609	Process	Cell-cell adhesion	IEA
GO:0098641	Function	Cadherin binding involved in cell-cell adhesion	HDA	25468996

MIM	HGNC	e!Ensembl
602374	2157	ENSG00000117519

Q15417

Protein name

Calponin-3 (Calponin, acidic isoform)

Protein function

Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-A

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00307	CH	26 → 131	Calponin homology (CH) domain	Domain
PF00402	Calponin	164 → 188	Calponin family repeat	Repeat
PF00402	Calponin	204 → 228	Calponin family repeat	Repeat
PF00402	Calponin	243 → 267	Calponin family repeat	Repeat

Tissue specificity

TISSUE SPECIFICITY: Expressed in both non-smooth muscle tissues as well as smooth muscle tissues.

Sequence

MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGPNFQLGLKDGIILCE
LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
QAEYPDEYHGEYQDDYPRDYQYSDQGIDY

Sequence length

329

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
CARCINOMA	—	CTD	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
PROSTATIC NEOPLASMS	—	CTD	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (28)

Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Associations from Text Mining Disease associations identified through text mining
Anaplastic carcinoma	Anaplastic Carcinoma	CTD_human_DG	12376462		★★★★★ ★☆☆☆☆ Found in Text Mining only
Autistic Disorder	Autism	Pubtator	37794117	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Carcinoma	Carcinoma	CTD_human_DG	12376462		★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Carcinoma Hepatocellular	Hepatocellular carcinoma	Pubtator	37960718	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Carcinoma, Spindle-Cell	Carcinoma	CTD_human_DG	12376462		★★★★★ ★☆☆☆☆ Found in Text Mining only
Colon Carcinoma	Colon Carcinoma	BEFREE	31798778		★★★★★ ★☆☆☆☆ Found in Text Mining only
Colorectal Carcinoma	Colorectal Cancer	BEFREE	30114595		★★★★★ ★☆☆☆☆ Found in Text Mining only
Colorectal Neoplasms	Colorectal neoplasm	Pubtator	24934327, 34797350	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Epilepsy	Epilepsy	BEFREE	22119193		★★★★★ ★☆☆☆☆ Found in Text Mining only
Glioma	Glioma	Pubtator	34797350	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Lupus Erythematosus, Systemic	Lupus Erythematosus	BEFREE	29749720		★★★★★ ★☆☆☆☆ Found in Text Mining only
Lymphatic Metastasis	Lymphatic metastasis	Pubtator	24934327	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Malignant neoplasm of prostate	Prostate cancer	CTD_human_DG	17013881		★★★★★ ★☆☆☆☆ Found in Text Mining only
Malignant neoplasm of stomach	Stomach Neoplasms	BEFREE	30911294		★★★★★ ★☆☆☆☆ Found in Text Mining only
Malignant tumor of colon	Colonic Neoplasms	BEFREE	31798778		★★★★★ ★☆☆☆☆ Found in Text Mining only
Mucosa-Associated Lymphoid Tissue Lymphoma	Mucosa-associated lymphoma	LHGDN	18927281		★★★★★ ★☆☆☆☆ Found in Text Mining only
Multiple Sclerosis	Multiple Sclerosis	BEFREE	29749720		★★★★★ ★☆☆☆☆ Found in Text Mining only
Myositis	Myositis	BEFREE	29749720		★★★★★ ★☆☆☆☆ Found in Text Mining only
Neoplasms	Neoplasms	BEFREE	31326556		★★★★★ ★☆☆☆☆ Found in Text Mining only
Neuropathy	Neuropathy	BEFREE	29749720		★★★★★ ★☆☆☆☆ Found in Text Mining only
Prostatic Neoplasms	Prostatic Neoplasms	CTD_human_DG	17013881		★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Schizophrenia	Schizophrenia	Pubtator	37794117	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Sepsis	Sepsis	Pubtator	29885947	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Stomach Carcinoma	Stomach Carcinoma	BEFREE	30911294		★★★★★ ★☆☆☆☆ Found in Text Mining only
Stomach Neoplasms	Stomach neoplasms	Pubtator	34797350	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Thyroid Cancer Papillary	Papillary thyroid cancer	Pubtator	37783270	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Undifferentiated carcinoma	Carcinoma	CTD_human_DG	12376462		★★★★★ ★☆☆☆☆ Found in Text Mining only
Uterine Cervical Neoplasms	Uterine neoplasm	Pubtator	34797350	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only

CNN3 (calponin 3)