Gene Gene information from NCBI Gene database.
Entrez ID 125336
Gene name Lipoxygenase homology PLAT domains 1
Gene symbol LOXHD1
Synonyms (NCBI Gene)
DFNB77LH2D1
Chromosome 18
Chromosome location 18q21.1
Summary This gene encodes a highly conserved protein consisting entirely of PLAT (polycystin/lipoxygenase/alpha-toxin) domains, thought to be involved in targeting proteins to the plasma membrane. Studies in mice show that this gene is expressed in the mechanosen
SNPs SNP information provided by dbSNP.
55
SNP ID Visualize variation Clinical significance Consequence
rs61733519 G>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance Coding sequence variant, missense variant
rs75949023 G>A,T Pathogenic, pathogenic-likely-pathogenic, benign Stop gained, coding sequence variant, genic upstream transcript variant, synonymous variant
rs116413527 C>A,T Benign-likely-benign, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, coding sequence variant, synonymous variant
rs121918370 G>A Pathogenic Genic upstream transcript variant, stop gained, coding sequence variant
rs140437150 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, intron variant, genic upstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
2
miRTarBase ID miRNA Experiments Reference
MIRT050251 hsa-miR-25-3p CLASH 23622248
MIRT1115363 hsa-miR-4691-3p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
7
GO ID Ontology Definition Evidence Reference
GO:0007605 Process Sensory perception of sound IBA
GO:0007605 Process Sensory perception of sound IEA
GO:0007605 Process Sensory perception of sound IMP 19732867
GO:0032420 Component Stereocilium IBA
GO:0032420 Component Stereocilium IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613072 26521 ENSG00000167210
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8IVV2
Protein name Lipoxygenase homology domain-containing protein 1
Protein function Involved in hearing. Required for normal function of hair cells in the inner ear (By similarity).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01477 PLAT 45 154 PLAT/LH2 domain Domain
PF01477 PLAT 174 286 PLAT/LH2 domain Domain
PF01477 PLAT 298 411 PLAT/LH2 domain Domain
PF01477 PLAT 427 538 PLAT/LH2 domain Domain
PF01477 PLAT 555 671 PLAT/LH2 domain Domain
PF01477 PLAT 686 803 PLAT/LH2 domain Domain
PF01477 PLAT 816 933 PLAT/LH2 domain Domain
PF01477 PLAT 971 1086 PLAT/LH2 domain Domain
PF01477 PLAT 1102 1225 PLAT/LH2 domain Domain
PF01477 PLAT 1256 1372 PLAT/LH2 domain Domain
PF01477 PLAT 1423 1539 PLAT/LH2 domain Domain
PF01477 PLAT 1554 1664 PLAT/LH2 domain Domain
PF01477 PLAT 1681 1796 PLAT/LH2 domain Domain
PF01477 PLAT 1812 1928 PLAT/LH2 domain Domain
PF01477 PLAT 1950 2060 PLAT/LH2 domain Domain
Sequence
MMPQKKRRRKKDIDFLALYEAELLNYASEDDEGELEHEYYKARVYEVVTATGDVRGAGTD
ANVFITLFGENGLSPKLQLTSKSKSAFEKGNVDVFRVRTNNVGLIYKVRIEHDNTGLNAS
WYLDHVIVTDMKRPHLRYYFNCNNWLSKVEGDRQ
WCRDLLASFNPMDMPRGNKYEVKVYT
GDVIGAGTDADVFINIFGEYGDTGERRLENEKDNFEKGAEDRFILDAPDLGQLMKINVGH
NNKGGSAGWFLSQIVIEDIGNKRKYDFPLNRWLALDEDDGKIQRDI
LVGGAETTAITYIV
TVFTGDVRGAGTKSKIYLVMYGARGNKNSGKIFLEGGVFDRGRTDIFHIELAVLLSPLSR
VSVGHGNVGVNRGWFCEKVVILCPFTGIQQTFPCSNWLDEKKADGLIERQL
YEMVSLRKK
RLKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTDEILLNPNNKWFKPGIIEKFRIEL
PDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNKDKYNFNCNRWLDANEDDNEIVRE
MT
AEGPTVRRIMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCRNNTDLFE
KGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLD
KDKDDGQLVRE
LLPSDSSATLKNFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVL
LVSDNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQ
YTFPANRWLDKNQADGRLEVELY
PSEVVEIQKLVHYEVEIWTGDVGGAGTSARVYMQIYG
EKGKTEVLFLSSRSKVFERASKDTFQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDR
IDITDMNNEITYYFPCQRWLAVEEDDGQLSREL
LPVDESYVLPQSEEGRGGGDNNPLDNL
ALEQKDKSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSI
EIFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDG
SIIRDL
FHAELQTRLYTPFVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYLCTN
KREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLPDKDGA
ETLTFPCDRWLATSEDDKKTIRELV
PYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQI
FTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIEAADLGVIYK
IKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKKEDGRLERLFY
EKEYTGDR
SSNCSSPADFWEIALSSKMADVDISTVTGPMADYVQEGPIIPYYVSVTTGKHKDAATDSR
AFIFLIGEDDERSKRIWLDYPRGKRGFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESC
WLVEELCLAVPTQGTKYMLNCNCWLAKDRGDGITSRVFD
LLDAMVVNIGVKVLYEMTVWT
GDVVGGGTDSNIFMTLYGINGSTEEMQLDKKKARFEREQNDTFIMEILDIAPFTKMRIRI
DGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLVC
EMCAVIDEEEMMEWTS
YTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSL
GHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQCDCWLSKSEGDGQTVRDF
ACAN
NKICDELEETTYEIVIETGNGGETRENVWLILEGRKNRSKEFLMENSSRQRAFRKGTTDT
FEFDSIYLGDIASLCVGHLAREDRFIPKRELAWHVKTITITEMEYGNVYFFNCDCLIPLK
RKRKYFKV
FEVTKTTESFASKVQSLVPVKYEVIVTTGYEPGAGTDANVFVTIFGANGDTG
KRELKQKMRNLFERGSTDRFFLETLELGELRKVRLEHDSSGYCSGWLVEKVEVTNTSTGV
ATIFNCGRWLDKKRGDGLTW
RDLFPSV
Sequence length 2067
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive nonsyndromic hearing loss 77 Likely pathogenic; Pathogenic rs960741408, rs776345911, rs2144167172, rs1280052681, rs1463849219, rs770408532, rs1434725624, rs2143918072, rs35449699, rs184966970, rs2144134166, rs909435840, rs2143422217, rs2144243196, rs777587826
View all (91 more)
RCV001374669
RCV002476713
RCV001836386
RCV001826141
RCV005014513
View all (104 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Deafness Likely pathogenic; Pathogenic rs75949023, rs1248889536 RCV004798747
RCV000520304
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hearing impairment Likely pathogenic; Pathogenic rs1598827506, rs776345911, rs1289895910, rs537227442, rs188119157 RCV001375174
RCV001375173
RCV001375256
RCV001375172
RCV001375153
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hearing loss, autosomal recessive Likely pathogenic; Pathogenic rs537227442 RCV000627051
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT ISOLATED SENSORINEURAL DEAFNESS TYPE DFNA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE ISOLATED SENSORINEURAL DEAFNESS TYPE DFNB Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
concomitant exotropia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Autosomal recessive non-syndromic sensorineural deafness type DFNB Non-Syndromic Sensorineural Deafness Orphanet
★☆☆☆☆
Found in Text Mining only
Brain Neoplasms Brain neoplasms Pubtator 29287594 Associate
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 29287594 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy Pubtator 33484326 Associate
★☆☆☆☆
Found in Text Mining only
Cleft Palate Cleft palate Pubtator 17564975 Associate
★☆☆☆☆
Found in Text Mining only
Deafness Deafness Pubtator 22975204, 23226338, 25792669, 28900111, 30139988, 35062939 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deafness Autosomal Recessive 77 Deafness Pubtator 31547530 Associate
★☆☆☆☆
Found in Text Mining only
DEAFNESS, AUTOSOMAL RECESSIVE 77 (disorder) Deafness CLINVAR_DG 21465660, 22975204, 23226338, 23897863, 25333069, 25792669, 27959697
★☆☆☆☆
Found in Text Mining only
DEAFNESS, AUTOSOMAL RECESSIVE 77 (disorder) Deafness GENOMICS_ENGLAND_DG 22341973
★☆☆☆☆
Found in Text Mining only
DEAFNESS, AUTOSOMAL RECESSIVE 77 (disorder) Deafness BEFREE 30760222
★☆☆☆☆
Found in Text Mining only