Gene Gene information from NCBI Gene database.
Entrez ID 1188
Gene name Chloride voltage-gated channel Kb
Gene symbol CLCNKB
Synonyms (NCBI Gene)
CLCKBClC-K2ClC-Kb
Chromosome 1
Chromosome location 1p36.13
Summary The protein encoded by this gene is a member of the family of voltage-gated chloride channels. Chloride channels have several functions, including the regulation of cell volume, membrane potential stabilization, signal transduction and transepithelial tra
SNPs SNP information provided by dbSNP.
27
SNP ID Visualize variation Clinical significance Consequence
rs121909131 C>G,T Pathogenic Upstream transcript variant, missense variant, genic upstream transcript variant, coding sequence variant
rs121909132 G>A Pathogenic Upstream transcript variant, missense variant, genic upstream transcript variant, coding sequence variant
rs121909133 C>A,T Uncertain-significance, pathogenic Missense variant, coding sequence variant
rs121909134 C>A Pathogenic Missense variant, coding sequence variant
rs121909135 T>C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
9
miRTarBase ID miRNA Experiments Reference
MIRT894895 hsa-miR-1292 CLIP-seq
MIRT894896 hsa-miR-216a CLIP-seq
MIRT894897 hsa-miR-3145-5p CLIP-seq
MIRT894898 hsa-miR-3192 CLIP-seq
MIRT894899 hsa-miR-4314 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0005247 Function Voltage-gated chloride channel activity IBA
GO:0005247 Function Voltage-gated chloride channel activity IEA
GO:0005247 Function Voltage-gated chloride channel activity TAS 8041726
GO:0005254 Function Chloride channel activity IDA 12111250
GO:0005254 Function Chloride channel activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602023 2027 ENSG00000184908
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P51801
Protein name Chloride channel protein ClC-Kb (Chloride channel Kb) (ClC-K2)
Protein function Anion-selective channel permeable to small monovalent anions with ion selectivity for chloride > bromide > nitrate > iodide (PubMed:11734858, PubMed:12111250). Forms a homodimeric channel where each subunit has its own ion conduction pathway. Ma
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00654 Voltage_CLC 102 514 Voltage gated chloride channel Family
PF00571 CBS 547 605 CBS domain Domain
Sequence
Sequence length 687
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Collecting duct acid secretion   Stimuli-sensing channels
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal dominant osteopetrosis 1 Likely pathogenic; Pathogenic rs377215024 RCV003388600
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bartter disease type 3 Likely pathogenic; Pathogenic rs777305169, rs201204502, rs202064075, rs368504008, rs1557468189, rs201540273, rs863224858, rs121909131, rs121909132, rs121909133, rs121909134, rs121909135, rs779908241, rs121909136, rs767271426
View all (21 more)
RCV001535929
RCV005040337
RCV002478007
RCV005050483
RCV002471697
View all (31 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bartter disease type 4B Likely pathogenic; Pathogenic rs777305169, rs201204502, rs202064075, rs368504008, rs201540273, rs863224858, rs121909132, rs121909133, rs779908241, rs121909136, rs767271426, rs139909733, rs370221310, rs953686324, rs1159737562
View all (7 more)
RCV001535929
RCV005040337
RCV002478007
RCV005050483
RCV005045069
View all (17 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bartter syndrome Pathogenic; Likely pathogenic rs201540273, rs121909132, rs755714542, rs1180658535 RCV003317629
RCV006263622
RCV006269267
RCV004689946
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BARTTER DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BARTTER SYNDROME TYPE 3 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BARTTER SYNDROME TYPE 4 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Fanconi syndrome Fanconi syndrome HPO_DG
★☆☆☆☆
Found in Text Mining only
Autosomal dominant hypocalcemia Hypocalcemia BEFREE 15056980
★☆☆☆☆
Found in Text Mining only
Bartter Disease Bartter syndrome CTD_human_DG 10561751
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bartter Disease Bartter syndrome BEFREE 10831588, 11445802, 12574213, 12761627, 15056980, 15531551, 15717167, 15875219, 16391491, 17622951, 18310267, 18648499, 21479528, 21631963, 21865213
View all (17 more)
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bartter Disease Bartter syndrome LHGDN 11865110, 12472765, 16902263, 17622951, 18094726
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bartter Syndrome Bartter syndrome Pubtator 12472765, 12911530, 16902263, 21631963, 21937999, 28334417, 28555925, 29442545, 30760291, 31409296, 32624484, 32857947, 33827883, 35913199, 36305432
View all (1 more)
Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bartter syndrome type 3 Bartter syndrome Pubtator 23345488, 24058621, 24965226, 26537508, 28288174, 28381550, 31409296, 33807568, 33827883, 35913199, 37612755 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bartter syndrome, type 3 Bartter syndrome BEFREE 10906158, 12472765, 12920401, 15148291, 16306206, 16391491, 16902263, 19050915, 19807735, 24271511, 25810436, 28555925, 28775266, 29442545, 31409296
View all (2 more)
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bartter syndrome, type 3 Bartter syndrome ORPHANET_DG 17622951, 24058621
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bartter syndrome, type 3 Bartter syndrome GENOMICS_ENGLAND_DG 23550235
★★☆☆☆
Found in Text Mining + Unknown/Other Associations