Gene Gene information from NCBI Gene database.
Entrez ID 1161
Gene name ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Gene symbol ERCC8
Synonyms (NCBI Gene)
CKN1CSAUVSS2
Chromosome 5
Chromosome location 5q12.1
Summary This gene encodes a WD repeat protein, which interacts with Cockayne syndrome type B (CSB) protein and with p44 protein, a subunit of the RNA polymerase II transcription factor IIH. Mutations in this gene have been identified in patients with hereditary d
SNPs SNP information provided by dbSNP.
30
SNP ID Visualize variation Clinical significance Consequence
rs61754098 G>T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, missense variant
rs121434323 G>C,T Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant
rs121434325 G>A Uncertain-significance, likely-pathogenic Coding sequence variant, intron variant, missense variant
rs148393161 C>T Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs150727525 C>G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
146
miRTarBase ID miRNA Experiments Reference
MIRT005022 hsa-miR-521 Western blot 18668526
MIRT029207 hsa-miR-26b-5p Microarray 19088304
MIRT560099 hsa-miR-144-3p PAR-CLIP 20371350
MIRT560098 hsa-miR-3688-3p PAR-CLIP 20371350
MIRT560097 hsa-miR-4802-5p PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
45
GO ID Ontology Definition Evidence Reference
GO:0000012 Process Single strand break repair IDA 29545921
GO:0000109 Component Nucleotide-excision repair complex IBA
GO:0000109 Component Nucleotide-excision repair complex IDA 12732143
GO:0000209 Process Protein polyubiquitination IBA
GO:0000209 Process Protein polyubiquitination IDA 12732143
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609412 3439 ENSG00000049167
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13216
Protein name DNA excision repair protein ERCC-8 (Cockayne syndrome WD repeat protein CSA)
Protein function Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair (TC-NER), a process during which RNA polymerase II-blocking lesions are
PDB 4A11 , 6FCV , 7OO3 , 7OOB , 7OOP , 7OPC , 7OPD , 8B3D , 8B3F , 8B3G , 8B3I , 8QH5 , 9BZ0 , 9ER2 , 9FD2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 85 128 WD domain, G-beta repeat Repeat
PF00400 WD40 176 215 WD domain, G-beta repeat Repeat
PF00400 WD40 222 273 WD domain, G-beta repeat Repeat
PF00400 WD40 324 362 WD domain, G-beta repeat Repeat
Sequence
MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
DKTLKVWD
TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWD
VRRASGCLITLDQHNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN
SSNGENTLVNYGKVCNNSKKGLKFTVS
CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
WV
PSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
Sequence length 396
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Nucleotide excision repair
Ubiquitin mediated proteolysis
  Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Neddylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cockayne syndrome Likely pathogenic; Pathogenic rs2112491212, rs1211144774, rs121434323, rs121434325, rs2112522829, rs143367518, rs774047625, rs770499406, rs148393161, rs281875222, rs370657735 RCV003492265
RCV005924207
RCV003330380
RCV005406718
RCV003493354
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cockayne syndrome type 1 Likely pathogenic; Pathogenic rs1188760861, rs1290416270, rs756880941, rs530679736, rs2112522943, rs121434323, rs121434325, rs121434326, rs2531795499, rs2531795554, rs2531802244, rs2531839441, rs2531795414, rs786205176, rs2531802402
View all (42 more)
RCV005634131
RCV005038206
RCV005038441
RCV005038394
RCV005032005
View all (56 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ERCC8-related disorder Likely pathogenic; Pathogenic rs2112491212, rs530679736 RCV003399385
RCV003394304
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ovarian serous cystadenocarcinoma Likely pathogenic rs551105507 RCV005912614
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormality of the nervous system Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COCKAYNE SYNDROME A HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COCKAYNE SYNDROME TYPE 2 GWAS catalog, Orphanet
GWAS catalog, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenoleukodystrophy Adrenoleukodystrophy BEFREE 11898854
★☆☆☆☆
Found in Text Mining only
Anhidrosis Anhidrosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 37684436 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 32160415 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy, Familial Idiopathic Cardiomyopathy BEFREE 27441470
★☆☆☆☆
Found in Text Mining only
Carpal Tunnel Syndrome Carpal Tunnel Syndrome BEFREE 30805796
★☆☆☆☆
Found in Text Mining only
Cataract Cataract Pubtator 36454558 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebellar Ataxia Cerebellar ataxia Pubtator 36231052 Associate
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy CLINVAR_DG
★☆☆☆☆
Found in Text Mining only