Gene Gene information from NCBI Gene database.
Entrez ID 114327
Gene name EF-hand domain containing 1
Gene symbol EFHC1
Synonyms (NCBI Gene)
EJM1POC9RIB72dJ304B14.2
Chromosome 6
Chromosome location 6p12.2
Summary This gene encodes an EF-hand-containing calcium binding protein. The encoded protein likely plays a role in calcium homeostasis. Mutations in this gene have been associated with susceptibility to juvenile myoclonic epilepsy and juvenile absence epilepsy.
SNPs SNP information provided by dbSNP.
23
SNP ID Visualize variation Clinical significance Consequence
rs59794069 ATATATATATAT>-,AT,ATAT,ATATAT,ATATATAT,ATATATATAT,ATATATATATATAT,ATATATATATATATAT,ATATATATATATATATAT,ATATATATATATATATATAT,ATATATATATATATATATATAT,ATATATATATATATATATATATAT,ATATATATATATATATATATATATAT,ATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATA Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity 3 prime UTR variant, non coding transcript variant
rs79761183 G>A,C Benign-likely-benign, risk-factor, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant
rs137852776 T>C Conflicting-interpretations-of-pathogenicity, risk-factor Missense variant, non coding transcript variant, coding sequence variant
rs137852777 G>A Pathogenic, risk-factor Missense variant, non coding transcript variant, coding sequence variant
rs137852778 G>A,T Risk-factor Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
459
miRTarBase ID miRNA Experiments Reference
MIRT050971 hsa-miR-17-5p CLASH 23622248
MIRT509176 hsa-miR-1277-5p HITS-CLIP 21572407
MIRT509175 hsa-miR-6758-5p HITS-CLIP 21572407
MIRT509174 hsa-miR-6856-5p HITS-CLIP 21572407
MIRT509173 hsa-miR-3163 HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0000281 Process Mitotic cytokinesis IBA
GO:0000281 Process Mitotic cytokinesis IMP 28370826
GO:0000922 Component Spindle pole IDA 28370826
GO:0000922 Component Spindle pole IEA
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608815 16406 ENSG00000096093
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q5JVL4
Protein name EF-hand domain-containing protein 1 (Myoclonin-1)
Protein function Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating (PubMed:36191189). Microtubule-associated protein which regulates cell division and neuronal mi
PDB 7UNG , 8J07
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06565 DUF1126 86 190 DUF1126 PH-like domain Domain
PF06565 DUF1126 232 351 DUF1126 PH-like domain Domain
PF06565 DUF1126 409 512 DUF1126 PH-like domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Not detected in lymphocytes. {ECO:0000269|PubMed:15258581, ECO:0000269|PubMed:36191189}.
Sequence
MVSNPVHGLPFLPGTSFKDSTKTAFHRSQTLSYRNGYAIVRRPTVGIGGDRLQFNQLSQA
ELDELASKAPVLTYGQPKQAPPADFIPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQV
NIYYYLEDDSMSVIEPVVENSGILQGKLIKRQRLAKNDRGDHYHWKDLNRGINITIYGKT
FRVVDCDQFT
QVFLESQGIELNPPEKMALDPYTELRKQPLRKYVTPSDFDQLKQFLTFDK
QVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRVPKV
LVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGRTFFIYDCDPFT
RRYYKEKFG
ITDLPRIDVSKREPPPVKQELPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVL
RYLAVLESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVD
NPVYYGPSDFFIGAVIEVFGHRFIILDTDEYV
LKYMESNAAQYSPEALASIQNHVRKREA
PAPEAESKQTEKDPGVQELEALIDTIQKQLKDHSCKDNIREAFQIYDKEASGYVDRDMFF
KICESLNVPVDDSLVKELIRMCSHGEGKINYYNFVRAFSN
Sequence length 640
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Absence seizure Uncertain significance; Conflicting classifications of pathogenicity; Likely benign; Benign; risk factor ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHILDHOOD ONSET ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EFHC1-related disorder Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Absence Seizure Disorder Absence Seizure CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Akinetic Petit Mal Akinetic Petit Mal CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 26542096
★☆☆☆☆
Found in Text Mining only
Childhood asthma Asthma GWASCAT_DG 26542096
★☆☆☆☆
Found in Text Mining only
Dermatitis, Atopic Dermatitis GWASCAT_DG 26542096
★☆☆☆☆
Found in Text Mining only
Eczema Eczema BEFREE 26542096
★☆☆☆☆
Found in Text Mining only
Epilepsy Epilepsy BEFREE 15258581, 16378686, 19298753, 20141545, 25489633, 27467453, 30810526, 7654068, 7746411, 9305351
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Epilepsy Epilepsy LHGDN 17159113
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Epilepsy Epilepsy Pubtator 22690745, 28074849, 31056551 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Epilepsy Idiopathic Generalized Epilepsy Pubtator 12830434, 36842888, 8352275 Associate
★☆☆☆☆
Found in Text Mining only