Gene Gene information from NCBI Gene database.
Entrez ID 112476
Gene name Proline rich transmembrane protein 2
Gene symbol PRRT2
Synonyms (NCBI Gene)
BFIC2BFIS2DSPB3DYT10EKD1FICCAICCAIFITMD1PKC
Chromosome 16
Chromosome location 16p11.2
Summary This gene encodes a transmembrane protein containing a proline-rich domain in its N-terminal half. Studies in mice suggest that it is predominantly expressed in brain and spinal cord in embryonic and postnatal stages. Mutations in this gene are associated
miRNA miRNA information provided by mirtarbase database.
209
miRTarBase ID miRNA Experiments Reference
MIRT490083 hsa-miR-8080 PAR-CLIP 20371350
MIRT490081 hsa-miR-483-5p PAR-CLIP 20371350
MIRT569947 hsa-miR-6873-5p PAR-CLIP 20371350
MIRT569946 hsa-miR-9500 PAR-CLIP 20371350
MIRT569945 hsa-miR-4533 PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005886 Component Plasma membrane IDA
GO:0005886 Component Plasma membrane IEA
GO:0008021 Component Synaptic vesicle IEA
GO:0008021 Component Synaptic vesicle ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
614386 30500 ENSG00000167371
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q7Z6L0
Protein name Proline-rich transmembrane protein 2 (Dispanin subfamily B member 3) (DSPB3)
Protein function As a component of the outer core of AMPAR complex, may be involved in synaptic transmission in the central nervous system. In hippocampal neurons, in presynaptic terminals, plays an important role in the final steps of neurotransmitter release,
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04505 CD225 264 331 Interferon-induced transmembrane protein Family
Sequence
MAASSSEISEMKGVEESPKVPGEGPGHSEAETGPPQVLAGVPDQPEAPQPGPNTTAAPVD
SGPKAGLAPETTETPAGASETAQATDLSLSPGGESKANCSPEDPCQETVSKPEVSKEATA
DQGSRLESAAPPEPAPEPAPQPDPRPDSQPTPKPALQPELPTQEDPTPEILSESVGEKQE
NGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRRAHSGHPGSPR
GSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWPVNIVAFAYAVMSRNSLQQ
GDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
CVINLGVYK
Sequence length 340
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Benign familial neonatal-infantile seizures 1 Likely pathogenic; Pathogenic rs587778771 RCV006253704
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Convulsions Likely pathogenic; Pathogenic rs587778771 RCV004798766
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Episodic kinesigenic dyskinesia Likely pathogenic; Pathogenic rs1220798796, rs2142427391, rs2142424961, rs2142425196, rs2142427166, rs1596893952, rs2142428932, rs2142425874, rs796052938, rs1217390170, rs2142423194, rs2142426594, rs906768870, rs1244255905, rs2142423439
View all (59 more)
RCV001372496
RCV001378291
RCV001382475
RCV001388476
RCV001390493
View all (74 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Episodic kinesigenic dyskinesia 1 Pathogenic; Likely pathogenic rs1403034524, rs2543334133, rs886042013, rs2466344219, rs2543333664, rs769519069, rs2543335595, rs2543335628, rs730882065, rs730882066, rs730882067, rs387907126, rs387907127, rs587778771, rs397514579
View all (5 more)
RCV002250268
RCV002289507
RCV002248505
RCV004796788
RCV003335790
View all (17 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BENIGN FAMILIAL INFANTILE EPILEPSY CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BENIGN FAMILIAL INFANTILE SEIZURES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHILDHOOD ONSET GLUT1 DEFICIENCY SYNDROME 2 CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Complex febrile seizure Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Actinic keratosis Actinic keratosis BEFREE 30944245
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 24990612
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 20200558
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 21406403
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy Adrenoleukodystrophy Pubtator 9639664 Associate
★☆☆☆☆
Found in Text Mining only
Adult type dermatomyositis Dermatomyositis BEFREE 23557915
★☆☆☆☆
Found in Text Mining only
AL-RAQAD SYNDROME AL-Raqad Syndrome BEFREE 15751970
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 10101252 Inhibit
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 17188679 Stimulate
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 18336728, 19233276, 22916103, 28831118, 8063812, 9144240 Associate
★☆☆☆☆
Found in Text Mining only