Gene Gene information from NCBI Gene database.
Entrez ID 11240
Gene name Peptidyl arginine deiminase 2
Gene symbol PADI2
Synonyms (NCBI Gene)
PAD-H19PAD2PDI2
Chromosome 1
Chromosome location 1p36.13
Summary This gene encodes a member of the peptidyl arginine deiminase family of enzymes, which catalyze the post-translational deimination of proteins by converting arginine residues into citrullines in the presence of calcium ions. The family members have distin
miRNA miRNA information provided by mirtarbase database.
254
miRTarBase ID miRNA Experiments Reference
MIRT655549 hsa-miR-5088-3p HITS-CLIP 19536157
MIRT655548 hsa-miR-6734-3p HITS-CLIP 19536157
MIRT655547 hsa-miR-3667-3p HITS-CLIP 19536157
MIRT655544 hsa-miR-623 HITS-CLIP 19536157
MIRT655543 hsa-miR-204-5p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0000791 Component Euchromatin IDA 22853951
GO:0004668 Function Protein-arginine deiminase activity IDA 12392711, 15629448, 18645041, 25621824
GO:0004668 Function Protein-arginine deiminase activity IEA
GO:0005509 Function Calcium ion binding IEA
GO:0005576 Component Extracellular region TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607935 18341 ENSG00000117115
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y2J8
Protein name Protein-arginine deiminase type-2 (EC 3.5.3.15) (PAD-H19) (Peptidylarginine deiminase II) (Protein-arginine deiminase type II)
Protein function Catalyzes the deimination of arginine residues of proteins.
PDB 4N20 , 4N22 , 4N24 , 4N25 , 4N26 , 4N28 , 4N2A , 4N2B , 4N2C , 4N2D , 4N2E , 4N2F , 4N2G , 4N2H , 4N2I , 4N2K , 4N2L , 4N2M , 4N2N , 9B96 , 9B97 , 9B98
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08526 PAD_N 1 114 Protein-arginine deiminase (PAD) N-terminal domain Domain
PF08527 PAD_M 116 274 Protein-arginine deiminase (PAD) middle domain Domain
PF03068 PAD 284 662 Protein-arginine deiminase (PAD) Family
Tissue specificity TISSUE SPECIFICITY: Detected in keratinocytes in epidermis (at protein level). {ECO:0000269|PubMed:12392711}.
Sequence
Sequence length 665
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Chromatin modifying enzymes
Neutrophil degranulation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
5
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal pulmonary interstitial morphology association ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
OROPHARYNX CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PARALYTIC STRABISMUS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Arthritis Arthritis BEFREE 17968929, 28188029
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis LHGDN 17968929
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 15020330, 17968929, 21859690, 22614825, 24339914, 26245941, 26927695, 27765067, 30161253, 30515171, 31876120, 32255561, 34421923, 34453079, 36076933
View all (3 more)
Associate
★☆☆☆☆
Found in Text Mining only
Arthropathy Arthropathy BEFREE 30515171
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune Diseases BEFREE 21878453, 30518690, 31292215
★☆☆☆☆
Found in Text Mining only
Bladder Neoplasm Bladder Neoplasm BEFREE 31267364
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 22911765, 28328217, 28549415, 31267364, 31601253
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 22911765, 25211228, 26067809, 34112737, 35737372, 37778380 Associate
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 27280713, 28403548 Inhibit
★☆☆☆☆
Found in Text Mining only
Carcinoma of bladder Bladder carcinoma BEFREE 31267364
★☆☆☆☆
Found in Text Mining only