Gene Gene information from NCBI Gene database.
Entrez ID 11152
Gene name WD repeat domain 45
Gene symbol WDR45
Synonyms (NCBI Gene)
JM5NBIA4NBIA5WDRX1WIPI-4WIPI4
Chromosome X
Chromosome location Xp11.23
Summary This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein com
SNPs SNP information provided by dbSNP.
26
SNP ID Visualize variation Clinical significance Consequence
rs201177026 C>G,T Likely-pathogenic Missense variant, coding sequence variant
rs387907331 ->T Pathogenic Frameshift variant, coding sequence variant
rs797046101 G>A Pathogenic-likely-pathogenic, pathogenic Stop gained, coding sequence variant
rs864309661 CCA>- Uncertain-significance, likely-pathogenic Inframe deletion, coding sequence variant
rs886041382 G>A Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
7
miRTarBase ID miRNA Experiments Reference
MIRT025809 hsa-miR-7-5p Microarray 19073608
MIRT1490696 hsa-miR-1343 CLIP-seq
MIRT1490697 hsa-miR-193a-5p CLIP-seq
MIRT1490698 hsa-miR-3667-3p CLIP-seq
MIRT1490699 hsa-miR-3936 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IMP 28561066
GO:0000407 Component Phagophore assembly site IDA 28561066
GO:0000407 Component Phagophore assembly site IEA
GO:0000422 Process Autophagy of mitochondrion IBA
GO:0000425 Process Pexophagy IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300526 28912 ENSG00000196998
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y484
Protein name WD repeat domain phosphoinositide-interacting protein 4 (WIPI-4) (WD repeat-containing protein 45)
Protein function Component of the autophagy machinery that controls the major intracellular degradation process by which cytoplasmic materials are packaged into autophagosomes and delivered to lysosomes for degradation (PubMed:23435086, PubMed:28561066). Binds p
PDB 8KBX , 8KC3 , 8Y1L
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 226 264 WD domain, G-beta repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed, with high expression in skeletal muscle and heart. Weakly expressed in liver and placenta. Expression is down-regulated in pancreatic and in kidney tumors. {ECO:0000269|PubMed:15602573}.
Sequence
MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRS
NLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLK
NRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPG
TSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATL
YCINFSHDSSFLCASSDKGTVHIF
ALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASF
TVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICDDDDF
Sequence length 360
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Autophagy - animal   Macroautophagy
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autism Likely pathogenic rs1602540235 RCV001004010
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Basal ganglia calcification Pathogenic rs1602540581 RCV001004011
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Developmental disorder Pathogenic rs2520266090 RCV003127353
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dystonic disorder Pathogenic rs1602540581 RCV001004011
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTISTIC DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BETA-PROPELLER PROTEIN-ASSOCIATED NEURODEGENERATION Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEVELOPMENTAL DISABILITIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EARLY-ONSET X-LINKED OPTIC ATROPHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Attention Deficit and Disruptive Behavior Disorders Attention deficit hyperactivity disorder Pubtator 29322350 Associate
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 29075622
★☆☆☆☆
Found in Text Mining only
Awakening Epilepsy Epilepsy CTD_human_DG 29942082
★☆☆☆☆
Found in Text Mining only
Basal Ganglia Diseases Basal ganglia disease Pubtator 39970510 Associate
★☆☆☆☆
Found in Text Mining only
Beta-propeller protein-associated neurodegeneration Beta-Propeller Protein-Associated Neurodegeneration Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Brain atrophy Brain atrophy BEFREE 28711740
★☆☆☆☆
Found in Text Mining only
Brain Diseases Brain disease Pubtator 26173968 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 26208877 Associate
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral atrophy Cerebral Atrophy BEFREE 28711740
★☆☆☆☆
Found in Text Mining only