Gene Gene information from NCBI Gene database.
Entrez ID 11151
Gene name Coronin 1A
Gene symbol CORO1A
Synonyms (NCBI Gene)
CLABPCLIPINAHCORO1IMD8TACOp57
Chromosome 16
Chromosome location 16p11.2
Summary This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein com
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs35967690 G>A,C Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs606231256 C>- Pathogenic Frameshift variant, coding sequence variant
rs1213680890 GTGC>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
19
miRTarBase ID miRNA Experiments Reference
MIRT005787 hsa-miR-221-3p Western blot 21226887
MIRT005791 hsa-miR-222-3p Western blot 21226887
MIRT030627 hsa-miR-24-3p Western blot 20138800
MIRT039639 hsa-miR-615-3p CLASH 23622248
MIRT2204107 hsa-miR-3652 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
85
GO ID Ontology Definition Evidence Reference
GO:0001771 Process Immunological synapse formation IMP 24760828
GO:0001772 Component Immunological synapse IDA 24760828
GO:0001772 Component Immunological synapse IEA
GO:0001845 Process Phagolysosome assembly IMP 12132654
GO:0001891 Component Phagocytic cup IDA 17442961
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605000 2252 ENSG00000102879
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P31146
Protein name Coronin-1A (Coronin-like protein A) (Clipin-A) (Coronin-like protein p57) (Tryptophan aspartate-containing coat protein) (TACO)
Protein function May be a crucial component of the cytoskeleton of highly motile cells, functioning both in the invagination of large pieces of plasma membrane, as well as in forming protrusions of the plasma membrane involved in cell locomotion. In mycobacteria
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08953 DUF1899 4 69 Domain of unknown function (DUF1899) Domain
PF00400 WD40 72 110 WD domain, G-beta repeat Repeat
PF00400 WD40 121 160 WD domain, G-beta repeat Repeat
PF00400 WD40 167 204 WD domain, G-beta repeat Repeat
PF16300 WD40_4 345 387 Repeat
PF08954 Trimer_CC 410 461 Trimerisation motif Coiled-coil
Tissue specificity TISSUE SPECIFICITY: Expressed in brain, thymus, spleen, bone marrow and lymph node. Low in lung and gut.
Sequence
Sequence length 461
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Phagosome
Tuberculosis
  Prevention of phagosomal-lysosomal fusion
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
26
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Severe combined immunodeficiency disease Likely pathogenic rs2151063606 RCV002266435
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Severe combined immunodeficiency due to CORO1A deficiency Likely pathogenic; Pathogenic rs2151063274, rs2151063096, rs112728974, rs606231256, rs2543751507, rs2543755846, rs2543756633, rs606231246, rs1213680890, rs397514755 RCV001379004
RCV001897325
RCV001993998
RCV000144854
RCV002933418
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Sinoatrial node disorder Likely pathogenic rs2543751945 RCV002305649
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANKYLOSING SPONDYLITIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Conflicting classifications of pathogenicity ClinVar
GenCC
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 16315255
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 31109257
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 16315255
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 11891530
★☆☆☆☆
Found in Text Mining only
Anaplastic carcinoma Anaplastic Carcinoma CTD_human_DG 21489049
★☆☆☆☆
Found in Text Mining only
Attention Deficit Disorder with Hyperactivity Attention deficit hyperactivity disorder Pubtator 19097825 Associate
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder BEFREE 19097825
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 19097825 Associate
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Beckwith-Wiedemann Syndrome Beckwith-Wiedemann Syndrome BEFREE 15900410, 27015986, 30352048
★☆☆☆☆
Found in Text Mining only
Bone Diseases Bone Disease BEFREE 28300073
★☆☆☆☆
Found in Text Mining only