Gene Gene information from NCBI Gene database.
Entrez ID 11091
Gene name WD repeat domain 5
Gene symbol WDR5
Synonyms (NCBI Gene)
BIG-3BIG3CFAP89SWD3
Chromosome 9
Chromosome location 9q34.2
Summary This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein com
miRNA miRNA information provided by mirtarbase database.
279
miRTarBase ID miRNA Experiments Reference
MIRT047941 hsa-miR-30c-5p CLASH 23622248
MIRT042008 hsa-miR-484 CLASH 23622248
MIRT039870 hsa-miR-615-3p CLASH 23622248
MIRT643671 hsa-miR-6865-3p HITS-CLIP 23824327
MIRT643669 hsa-miR-5699-5p HITS-CLIP 23824327
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SRY Activation 22523547
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
44
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 18838386
GO:0000123 Component Histone acetyltransferase complex IDA 20018852
GO:0001501 Process Skeletal system development IEA
GO:0005515 Function Protein binding IPI 12670868, 15960975, 16189514, 16713569, 16946699, 17021013, 17041588, 17178841, 17500065, 17925232, 17998332, 18378692, 18840606, 19047629, 19433796, 19556245, 20080758, 20085832, 20581860, 20818375, 21044950, 21220120, 22266653, 22665483, 23555304, 23870121, 23995757, 24788516, 249
GO:0005634 Component Nucleus IDA 17500065
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609012 12757 ENSG00000196363
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P61964
Protein name WD repeat-containing protein 5 (BMP2-induced 3-kb gene protein)
Protein function Contributes to histone modification (PubMed:16600877, PubMed:16829960, PubMed:19103755, PubMed:19131338, PubMed:19556245, PubMed:20018852). May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4' (PubMed:16829960). As p
PDB 2CNX , 2CO0 , 2G99 , 2G9A , 2GNQ , 2H13 , 2H14 , 2H68 , 2H6K , 2H6N , 2H6Q , 2H9L , 2H9M , 2H9N , 2H9P , 2O9K , 3EG6 , 3EMH , 3MXX , 3N0D , 3N0E , 3P4F , 3PSL , 3SMR , 3UR4 , 3UVK , 3UVL , 3UVM , 3UVN , 3UVO , 4A7J , 4CY1 , 4CY2 , 4ERQ , 4ERY , 4ERZ , 4ES0 , 4ESG , 4EWR , 4GM3 , 4GM8 , 4GM9 , 4GMB , 4IA9 , 4O45 , 4QL1 , 4Y7R , 5EAL , 5EAM , 5EAP , 5EAR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 35 72 WD domain, G-beta repeat Repeat
PF00400 WD40 77 115 WD domain, G-beta repeat Repeat
PF00400 WD40 119 157 WD domain, G-beta repeat Repeat
PF00400 WD40 161 199 WD domain, G-beta repeat Repeat
PF00400 WD40 203 242 WD domain, G-beta repeat Repeat
PF00400 WD40 246 287 WD domain, G-beta repeat Repeat
PF00400 WD40 291 331 WD domain, G-beta repeat Repeat
Sequence
Sequence length 334
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Polycomb repressive complex
Cushing syndrome
  PKMTs methylate histone lysines
HATs acetylate histones
RMTs methylate histone arginines
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
Neddylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
3
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Congenital heart disease Uncertain significance ClinVar
ClinGen, Disgenet
ClinGen, Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Neurodevelopmental disorder Uncertain significance ClinVar
GWAS catalog
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
NEURODEVELOPMENTAL DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute leukemia Leukemia BEFREE 28603984
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 27320920
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia Pubtator 29463886 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 36523143 Associate
★☆☆☆☆
Found in Text Mining only
Bladder Neoplasm Bladder Neoplasm BEFREE 25656485
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 19496786, 26355959, 28500289, 28929359, 30226578, 31421830, 31752957
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 24051437, 24120871, 26355959, 36043466 Associate
★☆☆☆☆
Found in Text Mining only
Burkitt Lymphoma Burkitt`s Lymphoma BEFREE 31767764
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 27192115, 35525905 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma of bladder Bladder carcinoma BEFREE 25656485
★☆☆☆☆
Found in Text Mining only