Gene Gene information from NCBI Gene database.
Entrez ID 10806
Gene name SHH signaling and ciliogenesis regulator SDCCAG8
Gene symbol SDCCAG8
Synonyms (NCBI Gene)
BBS16CCCAPCCCAP SLSN7HSPC085NPHP10NY-CO-8SLSN7hCCCAP
Chromosome 1
Chromosome location 1q43-q44
Summary This gene encodes a centrosome associated protein. This protein may be involved in organizing the centrosome during interphase and mitosis. Mutations in this gene are associated with retinal-renal ciliopathy. [provided by RefSeq, Oct 2010]
SNPs SNP information provided by dbSNP.
21
SNP ID Visualize variation Clinical significance Consequence
rs143407309 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant, intron variant, genic upstream transcript variant, 5 prime UTR variant, non coding transcript variant
rs148818431 T>C Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign 5 prime UTR variant, non coding transcript variant, synonymous variant, coding sequence variant, genic upstream transcript variant
rs149359674 G>A,T Conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant, intron variant, genic upstream transcript variant
rs150070966 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, 5 prime UTR variant, non coding transcript variant, coding sequence variant, intron variant, genic upstream transcript variant
rs267607031 A>T Pathogenic Genic upstream transcript variant, non coding transcript variant, intron variant, coding sequence variant, 5 prime UTR variant, stop gained
miRNA miRNA information provided by mirtarbase database.
46
miRTarBase ID miRNA Experiments Reference
MIRT017025 hsa-miR-335-5p Microarray 18185580
MIRT022273 hsa-miR-124-3p Microarray 18668037
MIRT1331653 hsa-miR-1205 CLIP-seq
MIRT1331654 hsa-miR-1224-5p CLIP-seq
MIRT1331655 hsa-miR-3929 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0001764 Process Neuron migration IBA
GO:0001764 Process Neuron migration IEA
GO:0005515 Function Protein binding IPI 20835237, 22190034, 22940612, 27224062, 32814053, 33961781
GO:0005654 Component Nucleoplasm IDA
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613524 10671 ENSG00000054282
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q86SQ7
Protein name Serologically defined colon cancer antigen 8 (Antigen NY-CO-8) (Centrosomal colon cancer autoantigen protein) (hCCCAP)
Protein function Plays a role in the establishment of cell polarity and epithelial lumen formation (By similarity). Also plays an essential role in ciliogenesis and subsequent Hedgehog signaling pathway that requires the presence of intact primary cilia for path
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15964 CCCAP 6 706 Centrosomal colon cancer autoantigen protein family Family
Tissue specificity TISSUE SPECIFICITY: Expressed in thymus, prostate, testis, ovary, small intestine, colon, mucosa, colon and renal cancer tumors. {ECO:0000269|PubMed:9610721}.
Sequence
Sequence length 713
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Bardet-Biedl syndrome Pathogenic; Likely pathogenic rs149038104, rs2147782314, rs397515335, rs397515337, rs2547886067, rs797045948, rs2528455666, rs1286714661, rs1390963789, rs772544112 RCV005361591
RCV001779472
RCV000625956
RCV002265541
RCV002308690
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome 16 Likely pathogenic; Pathogenic rs752046196, rs2070433656, rs149038104, rs964673995, rs2147782314, rs2149263988, rs1442457872, rs201658593, rs397515335, rs397515337, rs267607031, rs587777846, rs587777847, rs2528456354, rs2547828052
View all (31 more)
RCV001998335
RCV001377051
RCV001382396
RCV001384058
RCV002541103
View all (43 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Focal segmental glomerulosclerosis Likely pathogenic rs2547851230 RCV002294655
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ovarian serous cystadenocarcinoma Likely pathogenic rs756907665 RCV005901609
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIPOLAR DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC KIDNEY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CILIOPATHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Bardet-Biedl Syndrome Bardet-Biedl Syndrome ORPHANET_DG 20835237
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome Bardet-Biedl Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome BEFREE 21052717, 22626039, 29444170, 31534065
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome GENOMICS_ENGLAND_DG 22190896
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 16 Bardet-Biedl Syndrome GENOMICS_ENGLAND_DG 20835237, 22190896, 25529582
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 16 Bardet-Biedl Syndrome CLINVAR_DG 20835237, 22190896
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 16 Bardet-Biedl Syndrome CTD_human_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bipolar Disorder Bipolar Disorder GWASCAT_DG 24166486
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bipolar Disorder Bipolar disorder Pubtator 27759212 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations