Gene Gene information from NCBI Gene database.
Entrez ID 10804
Gene name Gap junction protein beta 6
Gene symbol GJB6
Synonyms (NCBI Gene)
CX30DFNA3DFNA3BDFNB1BECTD2ED2EDHHEDHED2
Chromosome 13
Chromosome location 13q12.11
Summary Gap junctions allow the transport of ions and metabolites between the cytoplasm of adjacent cells. They are formed by two hemichannels, made up of six connexin proteins assembled in groups. Each connexin protein has four transmembrane segments, two extrac
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs28937872 G>A Pathogenic Missense variant, coding sequence variant
rs35002004 C>T Conflicting-interpretations-of-pathogenicity, benign-likely-benign Coding sequence variant, synonymous variant
rs104894414 G>A Pathogenic Missense variant, coding sequence variant
rs104894415 C>G,T Pathogenic Missense variant, coding sequence variant
rs104894416 A>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT017331 hsa-miR-335-5p Microarray 18185580
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
37
GO ID Ontology Definition Evidence Reference
GO:0003163 Process Sinoatrial node development NAS 26786210
GO:0005243 Function Gap junction channel activity IBA
GO:0005243 Function Gap junction channel activity IDA 12767933
GO:0005515 Function Protein binding IPI 32296183
GO:0005884 Component Actin filament IMP 19285977
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604418 4288 ENSG00000121742
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95452
Protein name Gap junction beta-6 protein (Connexin-30) (Cx30)
Protein function One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00029 Connexin 2 215 Connexin Family
Sequence
Sequence length 261
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Gap junction assembly
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal dominant nonsyndromic hearing loss 3B Pathogenic rs104894414, rs104894415, rs28937872 RCV000088666
RCV000645727
RCV000798432
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive nonsyndromic hearing loss 1A Pathogenic rs104894415, rs28937872 RCV000645727
RCV000798432
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive nonsyndromic hearing loss 1B Pathogenic rs104894415, rs28937872 RCV000645727
RCV000798432
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
GJB6-related disorder Pathogenic rs104894415 RCV003335016
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTROCYTOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT ISOLATED SENSORINEURAL DEAFNESS TYPE DFNA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT NONSYNDROMIC HEARING LOSS HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 25861020
★☆☆☆☆
Found in Text Mining only
Allergic rhinitis (disorder) Allergic rhinitis BEFREE 30899365
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alopecia totalis Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alopecia universalis Alopecia universalis Pubtator 15140211 Associate
★☆☆☆☆
Found in Text Mining only
Anhydrotic Ectodermal Dysplasias Hypohidrotic ectodermal dysplasia BEFREE 18816645
★☆☆☆☆
Found in Text Mining only
Anhydrotic Ectodermal Dysplasias Hypohidrotic ectodermal dysplasia CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Aplasia Cutis Congenita Aplasia Cutis Congenita CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrichia Atrichia BEFREE 15140211
★☆☆☆☆
Found in Text Mining only