Gene Gene information from NCBI Gene database.
Entrez ID 10716
Gene name T-box brain transcription factor 1
Gene symbol TBR1
Synonyms (NCBI Gene)
AUTS5IDDASTBR-1TES-56
Chromosome 2
Chromosome location 2q24.2
Summary This gene is a member of a conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of numerous developmental processes. In mouse, the ortholog of this gene is express
SNPs SNP information provided by dbSNP.
21
SNP ID Visualize variation Clinical significance Consequence
rs762713626 C>G,T Likely-pathogenic Synonymous variant, coding sequence variant, missense variant
rs869312704 ->GGCTGCA Likely-pathogenic, pathogenic, pathogenic-likely-pathogenic, not-provided Frameshift variant, coding sequence variant
rs1553510171 C>- Likely-pathogenic Stop gained, coding sequence variant
rs1553510215 G>C Pathogenic Coding sequence variant, missense variant
rs1553510217 A>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
46
miRTarBase ID miRNA Experiments Reference
MIRT621869 hsa-miR-181c-3p HITS-CLIP 23824327
MIRT621868 hsa-miR-7151-5p HITS-CLIP 23824327
MIRT621867 hsa-miR-6777-3p HITS-CLIP 23824327
MIRT621866 hsa-miR-3162-3p HITS-CLIP 23824327
MIRT621865 hsa-miR-6777-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
35
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0001661 Process Conditioned taste aversion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604616 11590 ENSG00000136535
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q16650
Protein name T-box brain protein 1 (T-brain-1) (TBR-1) (TES-56)
Protein function Transcriptional repressor involved in multiple aspects of cortical development, including neuronal migration, laminar and areal identity, and axonal projection (PubMed:25232744, PubMed:30250039). As transcriptional repressor of FEZF2, it blocks
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00907 T-box 206 393 T-box Domain
PF16176 T-box_assoc 418 680 T-box transcription factor-associated Family
Tissue specificity TISSUE SPECIFICITY: Brain.
Sequence
Sequence length 682
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal brainstem MRI signal intensity Likely pathogenic; Pathogenic rs869312704 RCV001200907
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Aggressive behavior Likely pathogenic rs1553510182, rs1684181938, rs1684275626 RCV001200911
RCV001200913
RCV001200916
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Aplasia/Hypoplasia of the corpus callosum Likely pathogenic; Pathogenic rs1553510492 RCV000761565
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Attention deficit hyperactivity disorder Likely pathogenic rs1553510182, rs1684167000 RCV001200911
RCV001200912
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTISM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COMPLEX NEURODEVELOPMENTAL DISORDER CTD, ClinGen
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CORTICAL DYSPLASIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
2q24 microdeletion syndrome 2q24 microdeletion syndrome Orphanet
★☆☆☆☆
Found in Text Mining only
Antisocial Personality Disorder Antisocial personality disorder Pubtator 28158988 Associate
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia Pubtator 25232744 Associate
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 23160955, 30250039, 32144139, 32948248, 33948885 Associate
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 27325115, 28234597, 29288087, 30250039, 30268909, 30318412, 30792833, 31680851
★☆☆☆☆
Found in Text Mining only
Autistic behavior Autism HPO_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Autistic behavior Autism CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Autistic Disorder Autism BEFREE 19267418, 19401682, 23431145, 24599690, 25232744, 27325115, 28057268, 28234597
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism Pubtator 19401682, 24599690, 25232744, 32948248, 40004448 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism GENOMICS_ENGLAND_DG 23160955
★★☆☆☆
Found in Text Mining + Unknown/Other Associations