Gene Gene information from NCBI Gene database.
Entrez ID 10559
Gene name Solute carrier family 35 member A1
Gene symbol SLC35A1
Synonyms (NCBI Gene)
CDG2FCMPSTCSThCST
Chromosome 6
Chromosome location 6q15
Summary The protein encoded by this gene is found in the membrane of the Golgi apparatus, where it transports nucleotide sugars into the Golgi. One such nucleotide sugar is CMP-sialic acid, which is imported into the Golgi by the encoded protein and subsequently
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs10638303 ->CTCA Risk-factor Intron variant
rs145006535 A>C,G Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs149903512 G>A,C,T Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs578205635 C>G,T Pathogenic Missense variant, coding sequence variant
rs1554164712 T>C Pathogenic Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
164
miRTarBase ID miRNA Experiments Reference
MIRT000906 hsa-miR-15a-5p Microarray 18362358
MIRT000905 hsa-miR-16-5p Microarray 18362358
MIRT219500 hsa-miR-224-3p PAR-CLIP 22291592
MIRT219502 hsa-miR-522-3p PAR-CLIP 22291592
MIRT449699 hsa-miR-5700 PAR-CLIP 22291592
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IBA
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane TAS
GO:0005456 Function CMP-N-acetylneuraminate transmembrane transporter activity IBA
GO:0005456 Function CMP-N-acetylneuraminate transmembrane transporter activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605634 11021 ENSG00000164414
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P78382
Protein name CMP-sialic acid transporter (CMP-SA-Tr) (CMP-Sia-Tr) (CST) (Solute carrier family 35 member A1)
Protein function Transports CMP-sialic acid from the cytosol into the Golgi apparatus, functioning as an antiporter that exchanges CMP-sialic acid for CMP (PubMed:12682060, PubMed:15576474, PubMed:23873973). Binds both CMP-sialic acid and free CMP, but has highe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04142 Nuc_sug_transp 8 314 Nucleotide-sugar transporter Family
Sequence
Sequence length 337
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Sialic acid metabolism
Defective SLC35A1 causes congenital disorder of glycosylation 2F (CDG2F)
Defective SLC35A1 causes congenital disorder of glycosylation 2F (CDG2F)
Transport of nucleotide sugars
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
8
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
SLC35A1-congenital disorder of glycosylation Pathogenic; Likely pathogenic rs2482848939, rs1554166294, rs578205635, rs1554166844 RCV002280855
RCV000578208
RCV000578209
RCV000578207
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Congenital disorder of glycosylation Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIF CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIf, MODIFIER OF Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDERS OF GLYCOSYLATION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 29071208, 29785360, 31421506
★☆☆☆☆
Found in Text Mining only
Anhidrosis Anhidrosis BEFREE 3782855
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency HPO_DG
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 30337922, 30658195, 31555545
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 30337922, 30658195, 31555545
★☆☆☆☆
Found in Text Mining only
Behcet Syndrome Behcet Syndrome BEFREE 31314641
★☆☆☆☆
Found in Text Mining only
Cardiovascular Diseases Cardiovascular Diseases BEFREE 26211667, 31555545, 31807542
★☆☆☆☆
Found in Text Mining only
Cerebral Infarction Cerebral Infarction BEFREE 31809712
★☆☆☆☆
Found in Text Mining only
Cerebrovascular accident Stroke BEFREE 27840187, 28590584, 28691140, 29930399
★☆☆☆☆
Found in Text Mining only
Clinodactyly Clinodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only