Gene Gene information from NCBI Gene database.
Entrez ID 10397
Gene name N-myc downstream regulated 1
Gene symbol NDRG1
Synonyms (NCBI Gene)
CAP43CMT4DDRG-1DRG1GC4HMSNLNDR1NMSLPROXY1RIT42RTPTARG1TDD5
Chromosome 8
Chromosome location 8q24.22
Summary This gene is a member of the N-myc downregulated gene family which belongs to the alpha/beta hydrolase superfamily. The protein encoded by this gene is a cytoplasmic protein involved in stress responses, hormone responses, cell growth, and differentiation
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs11575976 C>G,T Pathogenic, uncertain-significance Splice acceptor variant
rs119483085 G>A Pathogenic Upstream transcript variant, genic upstream transcript variant, stop gained, coding sequence variant
rs143549909 G>A,T Conflicting-interpretations-of-pathogenicity Synonymous variant, missense variant, coding sequence variant
rs145871479 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity 5 prime UTR variant, intron variant, coding sequence variant, genic upstream transcript variant, missense variant
rs201959970 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
216
miRTarBase ID miRNA Experiments Reference
MIRT018414 hsa-miR-335-5p Microarray 18185580
MIRT025409 hsa-miR-34a-5p Proteomics 21566225
MIRT025409 hsa-miR-34a-5p Proteomics 21566225
MIRT025409 hsa-miR-34a-5p Proteomics 21566225
MIRT052351 hsa-let-7b-5p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
9
Transcription factor Regulation Reference
AR Unknown 17075604
ETS1 Repression 18381358
FOXD3 Activation 24269992
MYC Repression 11936845
MYC Unknown 21976667
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
36
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 15607035, 17220478, 17786215, 25416956, 32814053, 35271311
GO:0005634 Component Nucleus IDA 9766676
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IDA 9766676
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605262 7679 ENSG00000104419
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92597
Protein name Protein NDRG1 (Differentiation-related gene 1 protein) (DRG-1) (N-myc downstream-regulated gene 1 protein) (Nickel-specific induction protein Cap43) (Reducing agents and tunicamycin-responsive protein) (RTP) (Rit42)
Protein function Stress-responsive protein involved in hormone responses, cell growth, and differentiation. Acts as a tumor suppressor in many cell types. Necessary but not sufficient for p53/TP53-mediated caspase activation and apoptosis. Has a role in cell tra
PDB 6ZMM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03096 Ndr 34 316 Ndr family Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous; expressed most prominently in placental membranes and prostate, kidney, small intestine, and ovary tissues. Also expressed in heart, brain, skeletal muscle, lung, liver and pancreas. Low levels in peripheral blood leukocyte
Sequence
Sequence length 394
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
44
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Charcot-Marie-Tooth disease Likely pathogenic; Pathogenic rs879254290 RCV001173032
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Charcot-Marie-Tooth disease type 4 Likely pathogenic; Pathogenic rs2130785568, rs1586451553, rs1060503092, rs2130727371, rs1320417829, rs2130719686, rs112360093, rs1170222257, rs1855844502, rs2538025012, rs119483085, rs1405633183, rs2538018196, rs2538050254, rs2538131347
View all (9 more)
RCV001376869
RCV001386600
RCV001883545
RCV001946854
RCV002050614
View all (21 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Charcot-Marie-Tooth disease type 4D Likely pathogenic; Pathogenic rs199928197, rs2130719557, rs2130727581, rs2538056425, rs119483085, rs2538069534, rs879254290, rs2538042150, rs1060503092, rs1588216753 RCV001353163
RCV001837547
RCV001784718
RCV002283960
RCV000005427
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ovarian serous cystadenocarcinoma Likely pathogenic rs2538056425 RCV005930267
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTROCYTOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, NON-SMALL-CELL LUNG CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 19775754
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 16778198
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 22481237, 29431240
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 23549264, 29431240
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 14966915
★☆☆☆☆
Found in Text Mining only
Anaplastic astrocytoma Anaplastic Astrocytoma CTD_human_DG 15341671
★☆☆☆☆
Found in Text Mining only
Androgen-Insensitivity Syndrome Androgen-Insensitivity Syndrome BEFREE 29431240
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 28350132
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency BEFREE 23130941
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma CTD_human_DG 15341671
★★☆☆☆
Found in Text Mining + Unknown/Other Associations