Gene Gene information from NCBI Gene database.
Entrez ID 10367
Gene name Mitochondrial calcium uptake 1
Gene symbol MICU1
Synonyms (NCBI Gene)
CALCCBARA1EFHA3MPXPSara CALC
Chromosome 10
Chromosome location 10q22.1
Summary This gene encodes an essential regulator of mitochondrial Ca2+ uptake under basal conditions. The encoded protein interacts with the mitochondrial calcium uniporter, a mitochondrial inner membrane Ca2+ channel, and is essential in preventing mitochondrial
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs369915689 C>T Pathogenic Splice donor variant
rs375664373 C>A,G Likely-pathogenic Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs538329212 G>A,C,T Pathogenic Non coding transcript variant, genic upstream transcript variant, synonymous variant, coding sequence variant, stop gained, missense variant
rs749124658 C>- Pathogenic Coding sequence variant, genic upstream transcript variant, frameshift variant, non coding transcript variant
rs754639936 C>G,T Pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
335
miRTarBase ID miRNA Experiments Reference
MIRT037375 hsa-miR-877-5p CLASH 23622248
MIRT1148407 hsa-miR-15a CLIP-seq
MIRT1148408 hsa-miR-15b CLIP-seq
MIRT1148409 hsa-miR-16 CLIP-seq
MIRT1148410 hsa-miR-195 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
68
GO ID Ontology Definition Evidence Reference
GO:0005246 Function Calcium channel regulator activity IDA 32494073
GO:0005509 Function Calcium ion binding IBA
GO:0005509 Function Calcium ion binding IDA 23101630, 24514027
GO:0005509 Function Calcium ion binding IEA
GO:0005509 Function Calcium ion binding TAS 26975899
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605084 1530 ENSG00000107745
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BPX6
Protein name Calcium uptake protein 1, mitochondrial (Atopy-related autoantigen CALC) (ara CALC) (Calcium-binding atopy-related autoantigen 1) (allergen Hom s 4)
Protein function Calcium sensor of the mitochondrial calcium uniporter (MCU) channel, which senses calcium level via its EF-hand domains (PubMed:20693986, PubMed:23101630, PubMed:23747253, PubMed:24313810, PubMed:24332854, PubMed:24503055, PubMed:24560927, PubMe
PDB 4NSC , 4NSD , 6K7Y , 6LB7 , 6LB8 , 6LE5 , 6WDN , 6WDO , 6XJV , 6XJX , 6XQN , 6XQO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13202 EF-hand_5 223 247 EF hand Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in epithelial cell lines. Strongly expressed in epidermal keratinocytes and dermal endothelial cells. {ECO:0000269|PubMed:16002733, ECO:0000269|PubMed:9806765}.
Sequence
MFRLNSLSALAELAVGSRWYHGGSQPIQIRRRLMMVAFLGASAVTASTGLLWKRAHAESP
PCVDNLKSDIGDKGKNKDEGDVCNHEKKTADLAPHPEEKKKKRSGFRDRKVMEYENRIRA
YSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDGKK
ISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDM
EEFEQVQ
SIIRSQTSMGMRHRDRPTTGNTLKSGLCSALTTYFFGADLKGKLTIKNFLEFQ
RKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLT
FQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALF
DCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQETAWDFALPKQ
Sequence length 476
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Mitochondrial calcium ion transport
Processing of SMDT1
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
MICU1-related disorder Likely pathogenic; Pathogenic rs755651388 RCV003397615
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Neurodevelopmental disorder Pathogenic; Likely pathogenic rs369069489, rs749124658 RCV002277672
RCV002279272
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Proximal myopathy with extrapyramidal signs Likely pathogenic; Pathogenic rs1840027040, rs1840335901, rs754639936, rs369915689, rs746453954, rs375664373, rs755651388, rs2495370637, rs1135401814, rs749124658, rs538329212, rs375502236 RCV001328705
RCV001335371
RCV000087303
RCV000087304
RCV001527687
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormality of the nervous system Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BASAL GANGLIA DISEASES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL NEUROLOGIC ANOMALIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Learning Disorders Learning Disorders CTD_human_DG 24336167
★☆☆☆☆
Found in Text Mining only
Anophthalmia with pulmonary hypoplasia Anophthalmia Pubtator 32799327 Associate
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 29461604
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 29461604
★☆☆☆☆
Found in Text Mining only
Basal Ganglia Diseases Basal Ganglia Diseases CTD_human_DG 24336167
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Basal Ganglia Diseases Basal ganglia disease Pubtator 28132899, 39973469 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bipolar Disorder Bipolar Disorder BEFREE 27297032
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 24802861, 26851845
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 24802861 Associate
★☆☆☆☆
Found in Text Mining only