Gene Gene information from NCBI Gene database.
Entrez ID 10345
Gene name Triadin
Gene symbol TRDN
Synonyms (NCBI Gene)
CARDARCPVT5TDNTRISK
Chromosome 6
Chromosome location 6q22.31
Summary This gene encodes an integral membrane protein that contains a single transmembrane domain. As similar protein in rabbits plays a role in skeletal muscle excitation-contraction coupling as part of the calcium release complex in association with the ryanod
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs200243235 T>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, genic downstream transcript variant
rs202219343 G>A,C Likely-pathogenic, pathogenic, uncertain-significance Coding sequence variant, stop gained, missense variant, genic downstream transcript variant
rs377115913 C>A,T Likely-pathogenic Splice donor variant, genic downstream transcript variant
rs397515458 G>A Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant
rs578024729 T>C Pathogenic Genic downstream transcript variant, splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
63
miRTarBase ID miRNA Experiments Reference
MIRT017167 hsa-miR-335-5p Microarray 18185580
MIRT019248 hsa-miR-148b-3p Microarray 17612493
MIRT721427 hsa-miR-501-3p HITS-CLIP 19536157
MIRT721426 hsa-miR-502-3p HITS-CLIP 19536157
MIRT721425 hsa-miR-4639-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
43
GO ID Ontology Definition Evidence Reference
GO:0005102 Function Signaling receptor binding IEA
GO:0005515 Function Protein binding IPI 17526652, 32296183
GO:0005654 Component Nucleoplasm IDA
GO:0005783 Component Endoplasmic reticulum ISS
GO:0005829 Component Cytosol IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603283 12261 ENSG00000186439
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13061
Protein name Triadin
Protein function Contributes to the regulation of lumenal Ca2+ release via the sarcoplasmic reticulum calcium release channels RYR1 and RYR2, a key step in triggering skeletal and heart muscle contraction. Required for normal organization of the triad junction,
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05279 Asp-B-Hydro_N 42 269 Aspartyl beta-hydroxylase N-terminal region Family
Sequence
MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEKP
EKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKEV
QKTPSKPKEKEDKEKAAVSKHEQKDQYAF
CRYMIDIFVHGDLKPGQSPAIPPPLPTEQAS
RPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETKQ
GTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSDK
QVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKDKEPIKGKE
EKVPASLKEKEPETKKDEKMSKAGKEVKPKPPQLQGKKEEKPEPQIKKEAKPAISEKVQI
HKQDIVKPEKTVSHGKPEEKVLKQVKAVTIEKTAKPKPTKKAEHREREPPSIKTDKPKPT
PKGTSEVTESGKKKTEISEKESKEKADMKHLREEKVSTRKESLQLHNVTKAEKPARVSKD
VEDVPASKKAKEGTEDVSPTKQKSPISFFQCVYLDGYNGYGFQFPFTPADRPGESSGQAN
SPGQKQQGQ
Sequence length 729
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Calcium signaling pathway
Cardiac muscle contraction
  Stimuli-sensing channels
Ion homeostasis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cardiovascular phenotype Pathogenic; Likely pathogenic rs774068079, rs1198103383, rs762402822, rs2534346909, rs2534485636, rs2534485518, rs1209337990, rs1350873943, rs752256846, rs768049331, rs397515458, rs545032318 RCV002432068
RCV002344065
RCV002347569
RCV002346790
RCV002440041
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Catecholaminergic polymorphic ventricular tachycardia Likely pathogenic; Pathogenic rs757805966, rs397515458 RCV004017830
RCV004017360
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Catecholaminergic polymorphic ventricular tachycardia 1 Likely pathogenic; Pathogenic rs1432170970, rs757805966, rs774068079, rs2114339116, rs2114436209, rs1198103383, rs2114537918, rs2534346909, rs1209337990, rs2534401993, rs2534900959, rs1085307100, rs2534485312, rs1778806259, rs1780193710
View all (13 more)
RCV002551565
RCV003104072
RCV002499793
RCV002555321
RCV002507817
View all (23 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Catecholaminergic polymorphic ventricular tachycardia 5 Likely pathogenic; Pathogenic rs1432170970, rs774068079, rs753514580, rs2114436209, rs1198103383, rs1779402696, rs1085307100, rs1781162727, rs2533571418, rs2534485312, rs1780193710, rs1060502116, rs752256846, rs768049331, rs397515458
View all (3 more)
RCV002504650
RCV001580169
RCV001783906
RCV002507817
RCV005031911
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ARRHYTHMIAS, CARDIAC CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIAC ARRHYTHMIA SYNDROME, WITH OR WITHOUT SKELETAL MUSCLE WEAKNESS CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Arrhythmias Cardiac Cardiac arrhythmias Pubtator 37163978 Associate
★☆☆☆☆
Found in Text Mining only
Bradycardia Bradycardia Pubtator 40760564 Associate
★☆☆☆☆
Found in Text Mining only
Catecholaminergic polymorphic ventricular tachycardia Catecholaminergic Polymorphic Ventricular Tachycardia Orphanet
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital myopathy (disorder) Congenital myopathy BEFREE 28202702
★☆☆☆☆
Found in Text Mining only
Congestive heart failure Congestive Heart Failure BEFREE 26196381
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus Type 1 Diabetes mellitus, type 1 Pubtator 36175575 Stimulate
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus, Insulin-Dependent Diabetes Mellitus GWASCAT_DG 28672053
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus, Non-Insulin-Dependent Diabetes Mellitus BEFREE 14674716
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus, Non-Insulin-Dependent Diabetes Mellitus GWASCAT_DG 28672053
★☆☆☆☆
Found in Text Mining only
Diabetic Foot Diabetic Foot GWASCAT_DG 28672053
★★☆☆☆
Found in Text Mining + Unknown/Other Associations