Gene Gene information from NCBI Gene database.
Entrez ID 1028
Gene name Cyclin dependent kinase inhibitor 1C
Gene symbol CDKN1C
Synonyms (NCBI Gene)
BWCRBWSKIP2WBSp57p57Kip2
Chromosome 11
Chromosome location 11p15.4
Summary This gene is imprinted, with preferential expression of the maternal allele. The encoded protein is a tight-binding, strong inhibitor of several G1 cyclin/Cdk complexes and a negative regulator of cell proliferation. Mutations in this gene are implicated
SNPs SNP information provided by dbSNP.
38
SNP ID Visualize variation Clinical significance Consequence
rs104894200 G>A,T Uncertain-significance, pathogenic Missense variant, stop gained, coding sequence variant, intron variant
rs137852766 G>A Pathogenic Coding sequence variant, stop gained
rs267606716 G>C,T Pathogenic, likely-pathogenic Stop gained, coding sequence variant, missense variant
rs318240750 C>A,G Pathogenic, not-provided Coding sequence variant, missense variant
rs387906399 AG>C Pathogenic Coding sequence variant, intron variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
18
miRTarBase ID miRNA Experiments Reference
MIRT002272 hsa-miR-221-3p Reporter assay 18521080
MIRT002272 hsa-miR-221-3p Luciferase reporter assayWestern blot 18413744
MIRT000719 hsa-miR-222-3p Luciferase reporter assayWestern blot 18413744
MIRT004293 hsa-miR-92b-3p Luciferase reporter assayWestern blot 19544458
MIRT004293 hsa-miR-92b-3p Luciferase reporter assayWestern blot 19544458
Transcription factors Transcription factors information provided by TRRUST V2 database.
5
Transcription factor Regulation Reference
E2F1 Unknown 20106982
HOXA10 Repression 15749785
KLF4 Activation 19544095
PROX1 Activation 17069925
VHL Activation 15824735
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
35
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0001501 Process Skeletal system development IEA
GO:0001822 Process Kidney development IEA
GO:0001890 Process Placenta development IEA
GO:0004860 Function Protein kinase inhibitor activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600856 1786 ENSG00000129757
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P49918
Protein name Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent kinase inhibitor p57) (p57Kip2)
Protein function Potent tight-binding inhibitor of several G1 cyclin/CDK complexes (cyclin E-CDK2, cyclin D2-CDK4, and cyclin A-CDK2) and, to lesser extent, of the mitotic cyclin B-CDC2. Negative regulator of cell proliferation. May play a role in maintenance of
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02234 CDI 32 82 Cyclin-dependent kinase inhibitor Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the heart, brain, lung, skeletal muscle, kidney, pancreas and testis. Expressed in the eye. High levels are seen in the placenta while low levels are seen in the liver. {ECO:0000269|PubMed:22634751}.
Sequence
MSDASLRSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNR
WDYDFQQDMPLRGPGRLQWTEV
DSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLE
PAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP
APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLAD
QLHSGISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPCPSPSA
APGVGSVEQTPRKRLR
Sequence length 316
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cell cycle   Cyclin D associated events in G1
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Beckwith-Wiedemann syndrome Pathogenic; Likely pathogenic rs2133782104, rs2133784715, rs1220263188, rs1379762772, rs2133785734, rs2133786225, rs759365577, rs2133785723, rs2133785682, rs483352970, rs786205235, rs786205236, rs483352988, rs483352991, rs483352993
View all (82 more)
RCV001390492
RCV001383643
RCV001383932
RCV001385216
RCV001382544
View all (94 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
CDKN1C-related disorder Pathogenic; Likely pathogenic rs797045445, rs2494380120 RCV003401049
RCV003391324
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
IMAGe syndrome Pathogenic; Likely pathogenic rs483352989, rs2133784748, rs318240750, rs387907223, rs387907224, rs387907225, rs387907226, rs2133780371, rs1848883206, rs1554937698 RCV004815189
RCV005253937
RCV004816250
RCV004814925
RCV004814926
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Monogenic short statue Likely pathogenic rs1848883206 RCV005865475
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATYPICAL ENDOMETRIAL HYPERPLASIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beckwith-Wiedemann syndrome due to CDKN1C mutation Benign; Likely benign ClinVar
Disgenet, GWAS catalog, Orphanet
Disgenet, GWAS catalog, Orphanet
Disgenet, GWAS catalog, Orphanet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
COMPLEX ENDOMETRIAL HYPERPLASIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aarskog syndrome Aarskog Syndrome BEFREE 24313804
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 11380396, 12586619, 15978938, 16315255, 19109226, 20826236, 29793312
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 15936816
★☆☆☆☆
Found in Text Mining only
Addison Disease Addison`s Disease BEFREE 31610036
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma CTD_human_DG 21552421
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 31109257
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Basal Cell Adenocarcinoma CTD_human_DG 21552421
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Oxyphilic Adenocarcinoma CTD_human_DG 21552421
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Tubular Adenocarcinoma CTD_human_DG 21552421
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 12542400, 14612924
★☆☆☆☆
Found in Text Mining only