Gene Gene information from NCBI Gene database.
Entrez ID 10269
Gene name Zinc metallopeptidase STE24
Gene symbol ZMPSTE24
Synonyms (NCBI Gene)
FACE-1FACE1HGPSPRO1RSDM1STE24Ste24p
Chromosome 1
Chromosome location 1p34.2
Summary This gene encodes a member of the peptidase M48A family. The encoded protein is a zinc metalloproteinase involved in the two step post-translational proteolytic cleavage of carboxy terminal residues of farnesylated prelamin A to form mature lamin A. Mutat
SNPs SNP information provided by dbSNP.
18
SNP ID Visualize variation Clinical significance Consequence
rs61751009 G>A Pathogenic Splice acceptor variant
rs121908093 T>C Pathogenic, not-provided Non coding transcript variant, missense variant, coding sequence variant
rs121908094 C>T Pathogenic, not-provided Stop gained, non coding transcript variant, coding sequence variant
rs121908095 C>G,T Pathogenic, not-provided Non coding transcript variant, missense variant, coding sequence variant
rs137854889 T>-,TT Pathogenic Non coding transcript variant, frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
373
miRTarBase ID miRNA Experiments Reference
MIRT004942 hsa-miR-98-5p qRT-PCR 17942906
MIRT022576 hsa-miR-124-3p Microarray 18668037
MIRT438256 hsa-miR-141-3p Luciferase reporter assay 24101728
MIRT438256 hsa-miR-141-3p Luciferase reporter assay 24101728
MIRT1514642 hsa-miR-1226 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
90
GO ID Ontology Definition Evidence Reference
GO:0001889 Process Liver development IEA
GO:0001942 Process Hair follicle development IEA
GO:0003007 Process Heart morphogenesis IEA
GO:0003229 Process Ventricular cardiac muscle tissue development IEA
GO:0003231 Process Cardiac ventricle development IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606480 12877 ENSG00000084073
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75844
Protein name CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Farnesylated proteins-converting enzyme 1) (FACE-1) (Prenyl protein-specific endoprotease 1) (Zinc metalloproteinase Ste24 homolog)
Protein function Transmembrane metalloprotease whose catalytic activity is critical for processing lamin A/LMNA on the inner nuclear membrane and clearing clogged translocons on the endoplasmic reticulum (PubMed:33293369, PubMed:33315887). Proteolytically remove
PDB 2YPT , 4AW6 , 5SYT , 6BH8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16491 Peptidase_M48_N 41 225 CAAX prenyl protease N-terminal, five membrane helices Domain
PF01435 Peptidase_M48 228 473 Peptidase family M48 Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. High levels in kidney, prostate, testis and ovary. {ECO:0000269|PubMed:10076063}.
Sequence
Sequence length 475
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Terpenoid backbone biosynthesis  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
17
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Lethal tight skin contracture syndrome Pathogenic; Likely pathogenic rs312262686, rs281875370, rs2522367272, rs137854889, rs267607181, rs281875361, rs281875367, rs281875360, rs786205123, rs1569668526 RCV001727596
RCV002492493
RCV002289370
RCV000023547
RCV000004497
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Mandibuloacral dysplasia with type B lipodystrophy Pathogenic; Likely pathogenic rs312262686, rs281875369, rs281875370, rs137854889, rs121908093, rs121908094, rs121908095, rs1217416700, rs281875376 RCV004798783
RCV003147343
RCV002492493
RCV000004492
RCV000004493
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Restrictive dermopathy 1 Pathogenic rs137854889, rs2522418687 RCV004593959
RCV004595124
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ZMPSTE24-related disorder Pathogenic; Likely pathogenic rs137854889, rs1217416700 RCV000335839
RCV005230463
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CRANIOFACIAL ABNORMALITIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acanthosis Nigricans Acanthosis Nigricans HPO_DG
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acro-Osteolysis Acrosteolysis CTD_human_DG 12913070, 17152860
★☆☆☆☆
Found in Text Mining only
Acro-Osteolysis Acrosteolysis BEFREE 20631028
★☆☆☆☆
Found in Text Mining only
Actinic keratosis Actinic keratosis BEFREE 29526028
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 17374881
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia BEFREE 15608054
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia BEFREE 19128803
★☆☆☆☆
Found in Text Mining only
alpha^+^ Thalassemia alpha Thalassemia BEFREE 19128803
★☆☆☆☆
Found in Text Mining only