Gene Gene information from NCBI Gene database.
Entrez ID 10131
Gene name TNF receptor associated protein 1
Gene symbol TRAP1
Synonyms (NCBI Gene)
HSP 75HSP75HSP90LTRAP-1
Chromosome 16
Chromosome location 16p13.3
Summary This gene encodes a mitochondrial chaperone protein that is member of the heat shock protein 90 (HSP90) family. The encoded protein has ATPase activity and interacts with tumor necrosis factor type I. This protein may function in regulating cellular stres
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs113476582 T>A,C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
42
miRTarBase ID miRNA Experiments Reference
MIRT031812 hsa-miR-16-5p Proteomics 18668040
MIRT049372 hsa-miR-92a-3p qRT-PCR 23622248
MIRT031812 hsa-miR-16-5p CLASH 23622248
MIRT050940 hsa-miR-17-5p CLASH 23622248
MIRT050345 hsa-miR-25-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003723 Function RNA binding HDA 22658674
GO:0005164 Function Tumor necrosis factor receptor binding NAS 7876093
GO:0005515 Function Protein binding IPI 17579517, 23564345, 23747254, 29128334
GO:0005524 Function ATP binding IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606219 16264 ENSG00000126602
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q12931
Protein name Heat shock protein 75 kDa, mitochondrial (HSP 75) (Heat shock protein family C member 5) (TNFR-associated protein 1) (Tumor necrosis factor type 1 receptor-associated protein) (TRAP-1)
Protein function Chaperone that expresses an ATPase activity. Involved in maintaining mitochondrial function and polarization, downstream of PINK1 and mitochondrial complex I. Is a negative regulator of mitochondrial respiration able to modulate the balance betw
PDB 4Z1F , 4Z1G , 4Z1H , 4Z1I , 5F3K , 5F5R , 5HPH , 5Y3N , 5Y3O , 6XG6 , 7C04 , 7C05 , 7C7B , 7C7C , 7KCK , 7KCL , 7KCM , 7KLU , 7KLV , 7U8U , 7U8V , 7U8W , 7U8X , 7ULK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02518 HATPase_c 108 260 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Domain
PF00183 HSP90 288 704 Hsp90 protein Family
Tissue specificity TISSUE SPECIFICITY: Found in skeletal muscle, liver, heart, brain, kidney, pancreas, lung, placenta and bladder. Expression is highly reduced in bladder cancer and renal cell carcinoma specimens compared to healthy tissues, but it is increased in other ty
Sequence
Sequence length 704
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Parkinson disease
Pathways of neurodegeneration - multiple diseases
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital anomalies of kidney and urinary tract 1 Pathogenic rs2548299083 RCV003235001
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CAKUT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 28088229
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 23735188, 24297638, 26517089, 28407697
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 23735188, 33145341 Associate
★☆☆☆☆
Found in Text Mining only
Cakut Congenital anomalies of kidney and urinary tract GENOMICS_ENGLAND_DG 24152966
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cakut Congenital anomalies of kidney and urinary tract BEFREE 24875543
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Carcinogenesis Carcinogenesis Pubtator 23747254, 26464709, 27662365 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 28177905
★☆☆☆☆
Found in Text Mining only
Carcinoma in Situ Carcinoma in situ Pubtator 28177905 Stimulate
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 28678347, 29383696
★☆☆☆☆
Found in Text Mining only
Carcinoma Ovarian Epithelial Epithelial ovarian carcinoma Pubtator 26408177 Associate
★☆☆☆☆
Found in Text Mining only