Gene Gene information from NCBI Gene database.
Entrez ID 1009
Gene name Cadherin 11
Gene symbol CDH11
Synonyms (NCBI Gene)
CAD11CDHOBESWSOBOSF-4TBHS2
Chromosome 16
Chromosome location 16q21
Summary This gene encodes a type II classical cadherin from the cadherin superfamily, integral membrane proteins that mediate calcium-dependent cell-cell adhesion. Mature cadherin proteins are composed of a large N-terminal extracellular domain, a single membrane
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs1555514463 AG>CTGATGATC Pathogenic Frameshift variant, coding sequence variant
rs1555515331 C>A Pathogenic Splice donor variant
rs1555515924 G>C Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
215
miRTarBase ID miRNA Experiments Reference
MIRT018564 hsa-miR-335-5p Microarray 18185580
MIRT022977 hsa-miR-124-3p Microarray 18668037
MIRT054102 hsa-miR-200c-3p ImmunohistochemistryLuciferase reporter assayMicroarrayQRTPCR 23497265
MIRT732299 hsa-miR-27b-3p Luciferase reporter assayqRT-PCRWestern blot 26706910
MIRT732299 hsa-miR-27b-3p Luciferase reporter assayqRT-PCRWestern blot 26706910
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
AR Unknown 20191612
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IBA
GO:0001501 Process Skeletal system development TAS 8163513
GO:0001503 Process Ossification NAS 8163513
GO:0003189 Process Aortic valve formation ISS 26188246
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600023 1750 ENSG00000140937
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P55287
Protein name Cadherin-11 (OSF-4) (Osteoblast cadherin) (OB-cadherin)
Protein function Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. Required for proper focal
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00028 Cadherin 59 150 Cadherin domain Domain
PF00028 Cadherin 164 259 Cadherin domain Domain
PF00028 Cadherin 273 375 Cadherin domain Domain
PF00028 Cadherin 388 479 Cadherin domain Domain
PF01049 Cadherin_C 641 789 Cadherin cytoplasmic region Family
Tissue specificity TISSUE SPECIFICITY: Expressed mainly in brain but also found in other tissues. Expressed in neuroblasts. In the embryo from 67 to 72 days of gestation, detected at high levels in facial mesenchyme including the central palatal mesenchyme, dental mesenchym
Sequence
Sequence length 796
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Adherens junctions interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Elsahy-Waters syndrome Likely pathogenic; Pathogenic rs2142492118, rs1555515331, rs1555514463, rs1555515924 RCV004785330
RCV003314254
RCV000626316
RCV000626317
RCV000626318
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Teebi hypertelorism syndrome 2 Pathogenic; Likely pathogenic rs2142480699, rs2142528709, rs1000294766, rs2142492118, rs2142459670, rs2142481275, rs2506893332 RCV001823799
RCV001823800
RCV001823801
RCV001823802
RCV001823803
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BRANCHIO-SKELETO-GENITAL SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BRANCHIOSKELETOGENITAL SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CDH11-related disorder Uncertain significance; Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC OBSTRUCTIVE PULMONARY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 28292214
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy Adrenoleukodystrophy Pubtator 19097204 Associate
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 28854563
★☆☆☆☆
Found in Text Mining only
Amelia involving the lower limbs Amelia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma Pubtator 39675431 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 26212797 Inhibit
★☆☆☆☆
Found in Text Mining only
Aortic valve disorder Aortic Valve Disease BEFREE 24356423, 30359089
★☆☆☆☆
Found in Text Mining only
Aortic Valve Stenosis Aortic valve stenosis Pubtator 36809926 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 21798287, 24681547, 25173800, 28115292, 30359089
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 19274078, 21385358, 22127696, 25975695, 26134265, 29476097, 30828336, 30876808 Associate
★☆☆☆☆
Found in Text Mining only