Gene Gene information from NCBI Gene database.
Entrez ID 10021
Gene name Hyperpolarization activated cyclic nucleotide gated potassium channel 4
Gene symbol HCN4
Synonyms (NCBI Gene)
BRGDA8EIG18SSS2
Chromosome 15
Chromosome location 15q24.1
Summary This gene encodes a member of the hyperpolarization-activated cyclic nucleotide-gated potassium channels. The encoded protein shows slow kinetics of activation and inactivation, and is necessary for the cardiac pacemaking process. This channel may also me
SNPs SNP information provided by dbSNP.
28
SNP ID Visualize variation Clinical significance Consequence
rs62641689 C>A,T Likely-pathogenic, likely-benign, benign-likely-benign Missense variant, coding sequence variant
rs104894485 C>T Pathogenic Missense variant, coding sequence variant
rs104894488 G>A,T Likely-benign, pathogenic Missense variant, coding sequence variant, synonymous variant
rs121908411 C>G Pathogenic Missense variant, coding sequence variant
rs138714806 C>G,T Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
230
miRTarBase ID miRNA Experiments Reference
MIRT000933 hsa-miR-1-3p qRT-PCRLuciferase reporter assayWestern blot 18458081
MIRT000933 hsa-miR-1-3p Luciferase reporter assay 18458081
MIRT000329 hsa-miR-133a-3p Luciferase reporter assay 18458081
MIRT016694 hsa-miR-133b Reporter assay;Western blot;qRT-PCR;Other 18458081
MIRT000933 hsa-miR-1-3p Microarray 18668037
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SP1 Activation 19471099
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
60
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0002027 Process Regulation of heart rate IMP 16407510
GO:0003163 Process Sinoatrial node development NAS 26786210
GO:0003254 Process Regulation of membrane depolarization IBA
GO:0003254 Process Regulation of membrane depolarization IDA 12750403, 16043489
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605206 16882 ENSG00000138622
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y3Q4
Protein name Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
Protein function Hyperpolarization-activated ion channel that are permeable to Na(+) and K(+) ions with very slow activation and inactivation (PubMed:10228147, PubMed:10430953, PubMed:20829353). Exhibits higher selectivity for K(+) over Na(+) ions (PubMed:102281
PDB 2MNG , 3OTF , 3U11 , 4HBN , 4KL1 , 4NVP , 6GYN , 6GYO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08412 Ion_trans_N 218 261 Ion transport protein N-terminal Family
PF00520 Ion_trans 262 525 Ion transport protein Family
PF00027 cNMP_binding 613 696 Cyclic nucleotide-binding domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in thalamus, testis and in heart, both in ventricle and atrium. Detected at much lower levels in amygdala, substantia nigra, cerebellum and hippocampus. {ECO:0000269|PubMed:10228147, ECO:0000269|PubMed:10430953}.
Sequence
MDKLPPSMRKRLYSLPQQVGAKAWIMDEEEDAEEEGAGGRQDPSRRSIRLRPLPSPSPSA
AAGGTESRSSALGAADSEGPARGAGKSSTNGDCRRFRGSLASLGSRGGGSGGTGSGSSHG
HLHDSAEERRLIAEGDASPGEDRTPPGLAAEPERPGASAQPAASPPPPQQPPQPASASCE
QPSVDTAIKVEGGAAAGDQILPEAEVRLGQAGFMQRQFGAMLQPGVNKFSLRMFGSQKAV
EREQERVKSAGFWIIHPYSDF
RFYWDLTMLLLMVGNLIIIPVGITFFKDENTTPWIVFNV
VSDTFFLIDLVLNFRTGIVVEDNTEIILDPQRIKMKYLKSWFMVDFISSIPVDYIFLIVE
TRIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIVN
LIGMMLLLCHWDGCLQFLVPMLQDFPDDCWVSINNMVNNSWGKQYSYALFKAMSHMLCIG
YGRQAPVGMSDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRR
QYQEKYKQVEQYMSF
HKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEIINFNCRKLVASMPLFANAD
PNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGE
ICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY
PMMRRAFETVALDRLDRIGKKNSI
LLHKVQHDLNSGVFNYQENEIIQQIVQHDREMAHCAHRVQAAASATPTPTPVIWTPLIQA
PLQAAAATTSVAIALTHHPRLPAAIFRPPPGSGLGNLGAGQTPRHLKRLQSLIPSALGSA
SPASSPSQVDTPSSSSFHIQQLAGFSAPAGLSPLLPSSSSSPPPGACGSPSAPTPSAGVA
ATTIAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAAQPSPAPPGARGGLGLPEHFLP
PPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGASPVGFT
PRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGRLT
QDLKLISASQPALPQDGAQTLRRASPHSSGESMAAFPLFPRAGGGSGGSGSSGGLGPPGR
PYGAIPGQHVTLPRKTSSGSLPPPLSLFGARATSSGGPPLTAGPQREPGARPEPVRSKLP
SNL
Sequence length 1203
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  cAMP signaling pathway
Taste transduction
  HCN channels
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
42
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Brugada syndrome 8 Likely pathogenic; Pathogenic rs2151221183, rs2151217044, rs1454748709, rs794727637, rs2549068917, rs1057519275, rs1060500103, rs1555475434, rs755356387, rs1060500107, rs121908411 RCV001894498
RCV002020237
RCV003505193
RCV000647252
RCV002876341
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cardiovascular phenotype Likely pathogenic; Pathogenic rs1454748709, rs794727637, rs1057519275, rs755356387, rs121908411 RCV002391369
RCV002390435
RCV006342257
RCV003163166
RCV002393656
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
HCN4-related disorder Likely pathogenic; Pathogenic rs2151221183, rs2549071412, rs121908411 RCV003387535
RCV004534376
RCV005866892
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Left ventricular noncompaction cardiomyopathy Likely pathogenic; Pathogenic rs2151217037, rs1454748709, rs1384829419, rs121908411 RCV002208729
RCV002204524
RCV002269250
RCV001254756
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Arrhythmogenic right ventricular cardiomyopathy Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrial fibrillation Benign; Likely benign; Uncertain significance ClinVar
CTD, Disgenet, GWAS catalog
CTD, Disgenet, GWAS catalog
CTD, Disgenet, GWAS catalog
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
ATRIAL FLUTTER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anxiety Disorders Anxiety Disorder BEFREE 21529705
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety disorder Pubtator 21529705 Associate
★☆☆☆☆
Found in Text Mining only
Arrhythmias Cardiac Cardiac arrhythmias Pubtator 36244448 Associate
★☆☆☆☆
Found in Text Mining only
Arrhythmogenic Right Ventricular Dysplasia Arrhythmogenic right ventricular cardiomyopathy BEFREE 26688388
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrial Fibrillation Atrial Fibrillation GWASDB_DG 22544366
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Atrial Fibrillation Atrial Fibrillation CTD_human_DG 22544366, 30061737
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Atrial Fibrillation Atrial Fibrillation GWASCAT_DG 22544366
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Atrial Fibrillation Atrial Fibrillation BEFREE 23178648, 24607718, 24825742, 25391453, 25953654, 27824142, 28104484, 30606942, 31481236
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Atrial Fibrillation Atrial fibrillation Pubtator 25953654, 31315459 Associate
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Atrial Fibrillation Atrial fibrillation Pubtator 26005035 Stimulate
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)