Gene Gene information from NCBI Gene database.
Entrez ID 100128927
Gene name Zinc finger and BTB domain containing 42
Gene symbol ZBTB42
Synonyms (NCBI Gene)
LCCS6ZNF925
Chromosome 14
Chromosome location 14q32.33
Summary The protein encoded by this gene is a member of the C2H2 zinc finger protein family. This protein is predicted to have a pox virus and zinc finger (POZ) domain at the N-terminus and four zinc finger domains at the C-terminus. In human and mouse, the prote
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs730882163 G>A Pathogenic Coding sequence variant, missense variant
rs1368607213 C>G,T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
663
miRTarBase ID miRNA Experiments Reference
MIRT608387 hsa-miR-8485 HITS-CLIP 23313552
MIRT608386 hsa-miR-329-3p HITS-CLIP 23313552
MIRT608385 hsa-miR-362-3p HITS-CLIP 23313552
MIRT608384 hsa-miR-603 HITS-CLIP 23313552
MIRT608383 hsa-miR-3941 HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0003677 Function DNA binding IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0005634 Component Nucleus IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613915 32550 ENSG00000179627
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
B2RXF5
Protein name Zinc finger and BTB domain-containing protein 42
Protein function Transcriptional repressor. Specifically binds DNA and probably acts by recruiting chromatin remodeling multiprotein complexes.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00651 BTB 14 122 BTB/POZ domain Domain
PF13894 zf-C2H2_4 334 357 Domain
PF00096 zf-C2H2 362 384 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 390 413 Zinc finger, C2H2 type Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in skeletal muscle (at protein level). {ECO:0000269|PubMed:21193930}.
Sequence
MEFPEHGGRLLGRLRQQRELGFLCDCTVLVGDARFPAHRAVLAACSVYFHLFYRDRPAGS
RDTVRLNGDIVTAPAFGRLLDFMYEGRLDLRSLPVEDVLAAASYLHMYDIVKVCKGRLQE
KD
RSLDPGNPAPGAEPAQPPCPWPVWTADLCPAARKAKLPPFGVKAALPPRASGPPPCQV
PEESDQALDLSLKSGPRQERVHPPCVLQTPLCSQRQPGAQPLVKDERDSLSEQEESSSSR
SPHSPPKPPPVPAAKGLVVGLQPLPLSGEGSRELELGAGRLASEDELGPGGPLCICPLCS
KLFPSSHVLQLHLSAHFRERDSTRARLSPDGVAPTCPLCGKTFSCTYTLKRHERTHSGEK
PYTCVQCGKSFQYSHNLSRHTVVHTREKPHACRWCERRFTQSGDLYRHVRKFHCGLVKSL
LV
Sequence length 422
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CHRONIC OBSTRUCTIVE PULMONARY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DEFORMITY OF CLAVICLE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DEFORMITY OF ELBOW Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DEFORMITY OF FOREARM Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Congenital contracture Congenital contracture BEFREE 25055871
★☆☆☆☆
Found in Text Mining only
Congenital contracture Congenital contracture HPO_DG
★☆☆☆☆
Found in Text Mining only
Heart Defects Congenital Congenital heart defect Pubtator 32590727 Associate
★☆☆☆☆
Found in Text Mining only
LETHAL CONGENITAL CONTRACTURE SYNDROME 6 Lethal Congenital Contracture Syndrome BEFREE 25055871
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
LETHAL CONGENITAL CONTRACTURE SYNDROME 6 Lethal Congenital Contracture Syndrome UNIPROT_DG 25055871
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
LETHAL CONGENITAL CONTRACTURE SYNDROME 6 Lethal Congenital Contracture Syndrome CTD_human_DG
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
LETHAL CONGENITAL CONTRACTURE SYNDROME 6 Lethal Congenital Contracture Syndrome CLINVAR_DG
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Macrocephaly Macrocephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Metabolic Syndrome Metabolic syndrome Pubtator 20872231 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Nasopharyngeal Carcinoma Nasopharyngeal carcinoma Pubtator 24632578, 27876891 Associate
★☆☆☆☆
Found in Text Mining only