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CDC6 (cell division cycle 6)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
990
Gene nameGene Name - the full gene name approved by the HGNC.
Cell division cycle 6
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
CDC6
SynonymsGene synonyms aliases
CDC18L, HsCDC18, HsCDC6, MGORS5
ChromosomeChromosome number
17
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q21.2
SummarySummary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is highly similar to Saccharomyces cerevisiae Cdc6, a protein essential for the initiation of DNA replication. This protein functions as a regulator at the early steps of DNA replication. It localizes in cell nucleus durin
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs4135010 A>G Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs200468440 C>G Likely-pathogenic, uncertain-significance Stop gained, coding sequence variant
rs387906842 C>G,T Pathogenic Coding sequence variant, missense variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001022 hsa-miR-26a-5p Western blot 18713946
MIRT016523 hsa-miR-193b-3p Microarray 20304954
MIRT021602 hsa-miR-142-3p Microarray 17612493
MIRT041141 hsa-miR-501-5p CLASH 23622248
MIRT040157 hsa-miR-615-3p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
AR Activation 24583551
AR Unknown 18541154
ARID3A Unknown 23659165
E2F1 Unknown 18541154
E2F3 Unknown 18541154
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000076 Process DNA replication checkpoint TAS 9566895
GO:0000079 Process Regulation of cyclin-dependent protein serine/threonine kinase activity TAS 9566895
GO:0000082 Process G1/S transition of mitotic cell cycle TAS
GO:0000083 Process Regulation of transcription involved in G1/S transition of mitotic cell cycle TAS
GO:0000166 Function Nucleotide binding TAS 8990175
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q99741
Protein name Cell division control protein 6 homolog (CDC6-related protein) (Cdc18-related protein) (HsCdc18) (p62(cdc6)) (HsCDC6)
Protein function Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated.
PDB 2CCH , 2CCI , 4I5L , 4I5N , 8HT7 , 8RWV , 8S0E
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13401 AAA_22
188 323
AAA domain
Domain
PF17872 AAA_lid_10
352 411
AAA lid domain
Domain
PF09079 Cdc6_C
465 544
CDC6, C terminal winged helix domain
Domain
Sequence
MPQTRSQAQATISFPKRKLSRALNKAKNSSDAKLEPTNVQTVTCSPRVKALPLSPRKRLG
DDNLCNTPHLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKI
LSSVRKSQEITTNSEQRCPLKKESACVRLFKQEGTCYQQAKLVLNTAVPDRLPAREREMD
VIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKKELKGFKTIMLNCMSLRTAQ
AVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTL
FEWPWLSNSHLVLIGIANTLDLT
DRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLN
QVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTIL
KPLSECKSP
SEPLIPKRVGLIHISQVISEVDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEV
TLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKE
IEHA
LKDKALIGNILATGLP
Sequence length 560
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Cell cycle
Chemical carcinogenesis - receptor activation
  Transcription of E2F targets under negative control by DREAM complex
Activation of ATR in response to replication stress
CDC6 association with the ORC:origin complex
CDT1 association with the CDC6:ORC:origin complex
Assembly of the pre-replicative complex
Orc1 removal from chromatin
Activation of the pre-replicative complex
CDK-mediated phosphorylation and removal of Cdc6
G1/S-Specific Transcription
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Craniosynostosis Craniosynostosis rs104893895, rs587777006, rs587777007, rs587777008, rs587777010, rs281865153, rs281865154, rs864321680, rs864321681, rs1057517670, rs1085307122, rs1064794325, rs1884302, rs1555750816, rs1599823350
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Meier-gorlin syndrome MEIER-GORLIN SYNDROME 5 rs121918494, rs387906826, rs143141689, rs387906828, rs1557573504, rs1378348220, rs387906842, rs387906847, rs797044461, rs387906917, rs147914553, rs779871947, rs387906918, rs200652608, rs786205258, rs387906969, rs587780305, rs864309486, rs864309487, rs864309488, rs797045852, rs1085307083, rs754080445, rs879255632, rs879255633, rs146559223, rs879255692, rs1131692169, rs777153067, rs751663397, rs752023208 21358632, 9566895, 11477602, 22333897
Unknown
Disease name Disease term dbSNP ID References
Camptodactyly of fingers Clinodactyly of the 5th finger
Clinodactyly Clinodactyly of fingers, Clinodactyly
Breast aplasia Congenital absence of breast
Anotia Congenital absence of external ear

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