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ZBED4 (zinc finger BED-type containing 4)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9889
Gene nameGene Name - the full gene name approved by the HGNC.
Zinc finger BED-type containing 4
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
ZBED4
SynonymsGene synonyms aliases
-
ChromosomeChromosome number
22
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
22q13.33
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT016619 hsa-miR-484 Sequencing 20371350
MIRT027812 hsa-miR-98-5p Microarray 19088304
MIRT439261 ebv-miR-BART4-5p HITS-CLIP 22473208
MIRT439261 ebv-miR-BART4-5p HITS-CLIP 22473208
MIRT1501754 hsa-miR-1 CLIP-seq
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription regulatory region sequence-specific DNA binding ISS
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
GO:0001917 Component Photoreceptor inner segment IEA
GO:0003723 Function RNA binding ISS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID O75132
Protein name Zinc finger BED domain-containing protein 4
Protein function Transcriptional regulator that binds to poly-guanine tracts in gene promoters and activates transcription (By similarity). Able to bind single- and double-stranded DNA and RNA (By similarity).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02892 zf-BED
118 166
BED zinc finger
Domain
PF02892 zf-BED
288 336
BED zinc finger
Domain
PF02892 zf-BED
459 506
BED zinc finger
Domain
PF02892 zf-BED
561 609
BED zinc finger
Domain
PF05699 Dimer_Tnp_hAT
1086 1164
hAT family C-terminal dimerisation region
Domain
Sequence
MENNLKTCPKEDGDFVSDKIKFKIEEEDDDGIPPDSLERMDFKSEQEDMKQTDSGGERAG
LGGTGCSCKPPGKYLSAESEDDYGALFSQYSSTLYDVAMEAVTQSLLSSRNMSSRKKSPA
WKHFFISPRDSTKAICMYCVKEFSRGKNEKDLSTSCLMRHVRRAHP
TVLIQENGSVSAVS
SFPSPSLLLPPQPADAGDLSTILSPIKLVQKVASKIPSPDRITEESVSVVSSEEISSDMS
VSEKCGREEALVGSSPHLPALHYDEPAENLAEKSLPLPKSTSGSRRRSAVWKHFYLSPLD
NSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHR
AIVLQENGGTGIPPLYSTPPTLLP
SLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLMEDVAAFSSSDDI
GEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKSEVWHHFSLAPMDSLKAECRYC
GCAISRGKKGDVGTSCLMRHLYRRHP
EVVGSQKGFLGASLANSPYATLASAESSSSKLTD
LPTVVTKNNQVMFPVNSKKTSKLWNHFSICSADSTKVVCLHCGRTISRGKKPTNLGTSCL
LRHLQRFHS
NVLKTEVSETARPSSPDTRVPRGTELSGASSFDDTNEKFYDSHPVAKKITS
LIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTAIPGMYDNVKQIIMSHL
KEAESGVIHFTSGIWMSNQTREYLTLTAHWVSFESPARPRCDDHHCSALLDVSQVDCDYS
GNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKTLNEGEHSSVQCFSHTVNLIVSEAI
KSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLE
RLIEQKRAINEMSVECNFRELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPM
VHILNRKVEMLFEETMGIDTMLRSLKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEE
EAEQYKQDLIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKL
PEAMVLAYLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTE
NGSLGQSRLMMEHFEKLIFLKVNL
PLIYFQY
Sequence length 1171
Interactions View interactions
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Schizophrenia Schizophrenia rs74315508, rs74315509, rs13447324, rs1558507406, rs387906932, rs387906933, rs863223354, rs863223355, rs776061422, rs863223349, rs748809996, rs759748655, rs863223353, rs863223350, rs863223356, rs781821239, rs863223348, rs863223346, rs863223347, rs863223351, rs863223352, rs61734270, rs797045205, rs869312829, rs869312830, rs770913157, rs869312832, rs869312831, rs781720548, rs1262969313 26198764

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