SEC24D (SEC24 homolog D, COPII component)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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9871 |
Gene nameGene Name - the full gene name approved by the HGNC.
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SEC24 homolog D, COPII component |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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SEC24D |
SynonymsGene synonyms aliases
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CLCRP2 |
ChromosomeChromosome number
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4 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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4q26 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene is a member of the SEC24 subfamily of the SEC23/SEC24 family, which is involved in vesicle trafficking. The encoded protein has similarity to yeast Sec24p component of COPII. COPII is the coat protein complex responsible f |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs148676365 |
C>T |
Pathogenic |
Coding sequence variant, missense variant, 5 prime UTR variant |
rs730882211 |
C>G |
Likely-pathogenic |
Missense variant, coding sequence variant, genic upstream transcript variant |
rs759594785 |
->G |
Pathogenic |
Coding sequence variant, genic upstream transcript variant, frameshift variant |
rs760670617 |
G>A,C |
Pathogenic |
Coding sequence variant, missense variant |
rs786204845 |
G>A |
Pathogenic |
Stop gained, coding sequence variant, genic upstream transcript variant |
rs786204846 |
T>G |
Pathogenic |
Coding sequence variant, missense variant |
rs1175597762 |
A>G |
Pathogenic |
Coding sequence variant, missense variant |
rs1182434832 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs1372766642 |
G>A |
Pathogenic |
Coding sequence variant, stop gained |
rs1578383414 |
C>A |
Pathogenic |
Coding sequence variant, missense variant |
rs1578456973 |
G>A |
Pathogenic |
Coding sequence variant, 5 prime UTR variant, missense variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
O94855 |
Protein name |
Protein transport protein Sec24D (SEC24-related protein D) |
Protein function |
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicle |
PDB |
3EFO
,
3EG9
,
5KYU
,
5KYW
,
5KYX
,
5KYY
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Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF04810 |
zf-Sec23_Sec24 |
360 → 398 |
Sec23/Sec24 zinc finger |
Domain |
PF04811 |
Sec23_trunk |
437 → 681 |
Sec23/Sec24 trunk domain |
Domain |
PF08033 |
Sec23_BS |
686 → 770 |
Sec23/Sec24 beta-sandwich domain |
Domain |
PF04815 |
Sec23_helical |
781 → 883 |
Sec23/Sec24 helical domain |
Domain |
PF00626 |
Gelsolin |
899 → 974 |
Gelsolin repeat |
Domain |
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Sequence |
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Sequence length |
1032 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Cole carpenter syndrome |
Cole Carpenter syndrome, Cole-Carpenter syndrome, COLE-CARPENTER SYNDROME 2 |
rs786204843, rs760670617, rs786204845, rs786204846, rs759594785, rs1578383414, rs1182434832, rs1578456973, rs1372766642 |
25683121, 25683121, 27942778 |
Coronal craniosynostosis |
Coronal craniosynostosis |
rs1566992093 |
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Dentinogenesis imperfecta |
Dentinogenesis Imperfecta |
rs121912985, rs1560477489, rs121912987, rs121912989, rs1560480632, rs67707918, rs66883877 |
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Developmental delay |
Global developmental delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
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Epilepsy |
Epilepsy |
rs113994140, rs119454947, rs28937874, rs1589762127, rs104894166, rs28939075, rs2134001459, rs104894167, rs119488099, rs119488100, rs1805032, rs387906420, rs121917752, rs121918622, rs121434579, rs1581220270, rs281865564, rs387907313, rs397514564, rs397514670, rs768241563, rs587776973, rs587776974, rs587776975, rs879255234, rs587776976, rs587776977, rs121917993, rs398123588, rs13306758, rs587777363, rs587777364, rs587777458, rs587777459, rs541024038, rs797044545, rs730882240, rs786205703, rs794726859, rs796053126, rs796053035, rs796053216, rs796052839, rs869025201, rs797044999, rs797044998, rs797045045, rs794726762, rs869312971, rs869312972, rs879255652, rs886037938, rs886037958, rs886037959, rs886037960, rs886037961, rs886037962, rs886037965, rs886037966, rs886039245, rs886039246, rs886039251, rs886039252, rs772872014, rs886039253, rs886039256, rs757511744, rs886039261, rs886039263, rs578185749, rs886039266, rs886039268, rs886039269, rs886039273, rs368820286, rs1057518801, rs1057518688, rs1057519107, rs1057519273, rs752753379, rs767795673, rs1057519424, rs755946598, rs760609867, rs1057521066, rs1057524233, rs1060501488, rs1060501487, rs755127868, rs751533302, rs771373457, rs1475605360, rs1555401942, rs1553567864, rs200661329, rs766667249, rs1556607762, rs1555882921, rs1555882867, rs1555900914, rs1553546836, rs77216276, rs755595256, rs1554169267, rs747661902, rs2105890565, rs1021001959, rs1555441032, rs1555439541, rs1556526609, rs1315483224, rs759952667, rs1555885023, rs1553456695, rs1555942720, rs1569083500, rs1559127505, rs1206309859, rs1567139896, rs1567134495, rs1431914212, rs1569166925, rs1569255443, rs1568955379, rs1567152003, rs374158137, rs1567129567, rs1569523728, rs1568991466, rs1569186093, rs1569254004, rs1372605067, rs1569067939, rs1568963062, rs1563959514, rs1569012755, rs1559118914, rs1602338615, rs1596522356, rs1364913665, rs1596522300, rs1596526976, rs1229740428, rs1596385588, rs1596500172, rs1596505517, rs1601925213, rs1601970168, rs1602010382, rs1602903591, rs1603014297, rs1603014708, rs1601875057, rs1601970824, rs1601755632, rs1587393982, rs1592977444, rs1575562076, rs1570998206, rs1588057922, rs1596528731, rs1602349641, rs1587401875, rs2065899210, rs1596526915, rs2093486364, rs2056165149, rs2056100951, rs781482552, rs1899868619, rs1900088045, rs1898675878, rs1898686157, rs1898837245, rs1898844513, rs2082841677, rs2085727988, rs2092933941, rs2091657024, rs1899864955, rs1898844907, rs2083056830, rs2084070588, rs1899713412, rs2082695884, rs1977106116, rs1977105425, rs1443687532 |
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Hydrocephalus |
Hydrocephalus |
rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546 |
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Macrocephaly |
Macrocephaly |
rs786204854, rs764333096, rs1557739557 |
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Myocardial infarction |
Myocardial Infarction |
rs12316150, rs41303970, rs909253, rs7291467, rs2234693 |
25948407 |
Osteochondrodysplasia |
Osteochondrodysplasias |
rs386833498, rs104893919, rs104893916, rs386833492, rs121908078, rs386833497, rs386833507, rs200963884, rs121908077, rs786204675, rs763198695, rs1554095433, rs766836061 |
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Scoliosis |
Scoliosis, unspecified |
rs1057518828, rs147296805, rs758163506, rs1555613564, rs1596852902, rs1596853067, rs1596853085 |
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Skeletal dysplasia |
Skeletal dysplasia |
rs121912632, rs121912633, rs121912634, rs121912636, rs121912637, rs267607147, rs387906324, rs267607150, rs397514473, rs398123438, rs515726153, rs515726154, rs515726162, rs515726163, rs515726172, rs757011098 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Acrocephaly |
Acrocephaly |
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Communicating hydrocephalus |
Communicating Hydrocephalus |
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Congenital pectus excavatum |
Congenital pectus excavatum |
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Dwarfism |
Dwarfism |
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Frontal bossing |
Frontal bossing |
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High palate |
Byzanthine arch palate |
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Micrognathism |
Micrognathism |
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Osteopenia |
Osteopenia |
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Proptosis |
Exophthalmos |
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Synostotic posterior plagiocephaly |
Synostotic Posterior Plagiocephaly |
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