PLEKHM1 (pleckstrin homology and RUN domain containing M1)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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9842 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Pleckstrin homology and RUN domain containing M1 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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PLEKHM1 |
SynonymsGene synonyms aliases
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AP162, B2, OPTA3, OPTB6 |
ChromosomeChromosome number
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17 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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17q21.31 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene is essential for bone resorption, and may play a critical role in vesicular transport in the osteoclast. Mutations in this gene are associated with autosomal recessive osteopetrosis type 6 (OPTB6). Alternatively spliced tr |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs559224144 |
G>A |
Pathogenic |
Non coding transcript variant, missense variant, coding sequence variant |
rs786205055 |
C>G,T |
Pathogenic |
Genic upstream transcript variant, intron variant, splice donor variant, 5 prime UTR variant |
rs1567759023 |
TG>- |
Pathogenic |
Frameshift variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0005730 |
Component |
Nucleolus |
IDA |
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GO:0005765 |
Component |
Lysosomal membrane |
IEA |
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GO:0006914 |
Process |
Autophagy |
IEA |
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GO:0010008 |
Component |
Endosome membrane |
IEA |
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GO:0015031 |
Process |
Protein transport |
IEA |
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GO:0032418 |
Process |
Lysosome localization |
ISS |
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GO:0035556 |
Process |
Intracellular signal transduction |
IEA |
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GO:0043231 |
Component |
Intracellular membrane-bounded organelle |
IDA |
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GO:0045780 |
Process |
Positive regulation of bone resorption |
ISS |
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GO:0046872 |
Function |
Metal ion binding |
IEA |
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GO:1900029 |
Process |
Positive regulation of ruffle assembly |
ISS |
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
Q9Y4G2 |
Protein name |
Pleckstrin homology domain-containing family M member 1 (PH domain-containing family M member 1) (162 kDa adapter protein) (AP162) |
Protein function |
Acts as a multivalent adapter protein that regulates Rab7-dependent and HOPS complex-dependent fusion events in the endolysosomal system and couples autophagic and the endocytic trafficking pathways. Acts as a dual effector of RAB7A and ARL8B th |
PDB |
5DPR
,
5DPS
,
5DPT
,
5DPW
,
8JC5
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Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF02759 |
RUN |
49 → 182 |
RUN domain |
Family |
PF13901 |
zf-RING_9 |
846 → 1048 |
Putative zinc-RING and/or ribbon |
Domain |
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Sequence |
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Sequence length |
1056 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anemia |
Anemia |
rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505 |
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Osteomyelitis |
Osteomyelitis |
rs11125529, rs10936599, rs7675998, rs398652, rs755017 |
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Osteopetrosis |
Osteopetrosis, Osteopetrosis - intermediate type, Osteopetrosis, Autosomal Recessive 6, OSTEOPETROSIS, AUTOSOMAL DOMINANT 3, Intermediate osteopetrosis |
rs786205055, rs1562370077, rs119460973, rs1554996130, rs137853149, rs751881962, rs137853150, rs137853151, rs2134438856, rs121908669, rs121908670, rs121908671, rs121908673, rs121908655, rs121908656, rs121908658, rs121908659, rs121434432, rs121434433, rs121434434, rs121434435, rs121434436, rs2137905441, rs121909072, rs863223288, rs398123011, rs387907576, rs397515539, rs267603829, rs587777490, rs139617644, rs794727287, rs573750741, rs886048594, rs777785526, rs1057517365, rs760956030, rs757788894, rs1554250938, rs367567630, rs1208311085, rs1554995350, rs1554995341, rs774308815, rs1458295257, rs1554997884, rs200851583, rs1554998061, rs758977199, rs1554999516, rs371263807, rs1475338876, rs917505107, rs1554995381, rs1554995582, rs1554995706, rs1554997818, rs1554997997, rs748659068, rs377303800, rs1554995009, rs1554999205, rs1300297240, rs1554995330, rs1385741705, rs1554995522, rs1392364437, rs749361897, rs1159666762, rs1269558164, rs1489993984, rs1439348400, rs559224144, rs1567759023, rs1567263375, rs1565156743, rs1590817956, rs1590819834, rs377215024, rs1582396088, rs1353879401, rs1590804397, rs1590819770, rs922106856, rs776436008, rs1855347940, rs761918801, rs1064794323 |
17404618, 17404618, 17997709, 17997709, 27291868 |
Parkinson disease |
Parkinson Disease |
rs116074753, rs118203903, rs118203904, rs115735611, rs33939927, rs35801418, rs34805604, rs35870237, rs34995376, rs74315355, rs28940284, rs74315356, rs74315357, rs28940285, rs730880302, rs750664040, rs74315359, rs74315360, rs45539432, rs74315361, rs119451946, rs80356771, rs74500255, rs75822236, rs1141814, rs78973108, rs121908681, rs121908686, rs121908687, rs137853054, rs137853055, rs137853056, rs137853057, rs137853058, rs137853059, rs34424986, rs137853060, rs397518439, rs28938172, rs74315351, rs74315353, rs137853051, rs118192098, rs121917767, rs121918104, rs1589451049, rs104893877, rs104893878, rs283413, rs112176450, rs111290936, rs188286943, rs387906863, rs387906864, rs774631197, rs199935023, rs387906942, rs397514694, rs398122403, rs398122404, rs398122405, rs104886460, rs409652, rs431905511, rs63751392, rs756677845, rs864309527, rs864309650, rs750014782, rs1554391082, rs864622011, rs869312810, rs869312809, rs869312811, rs369100678, rs879253853, rs869320761, rs747506979, rs879255630, rs886039854, rs191486604, rs781442277, rs1060499619, rs751037529, rs55777503, rs768091663, rs34208370, rs1553122929, rs772786691, rs754809877, rs1555907463, rs1557561340, rs781600849, rs141263564, rs1557901552, rs777160388, rs756783990, rs867929413, rs1237637353, rs1005937012, rs755000580, rs747427602, rs1578089802, rs771586218, rs748142049, rs1582953433, rs746646126, rs771529549, rs121918106 |
22438815, 20070850, 21738487, 19915575 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Alopecia |
Alopecia |
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28196072 |
Anodontia |
Anodontia of Permanent Dentition |
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Mental depression |
Unipolar Depression, Major Depressive Disorder |
rs587778876, rs587778877 |
29559929 |
Osteopenia |
Osteopenia |
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Ovarian neoplasm |
ovarian neoplasm |
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28346442, 23544013 |
Ovarian serous adenocarcinoma |
Ovarian Serous Adenocarcinoma |
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28346442 |
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