CHST3 (carbohydrate sulfotransferase 3)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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9469 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Carbohydrate sulfotransferase 3 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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CHST3 |
SynonymsGene synonyms aliases
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C6ST, C6ST1, HSD |
ChromosomeChromosome number
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10 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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10q22.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
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This gene encodes an enzyme which catalyzes the sulfation of chondroitin, a proteoglycan found in the extracellular matrix and most cells which is involved in cell migration and differentiation. Mutations in this gene are associated with spondylepiphyseal |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs28937593 |
G>A |
Conflicting-interpretations-of-pathogenicity |
Missense variant, coding sequence variant |
rs121908616 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs121908617 |
C>A,T |
Pathogenic |
Synonymous variant, missense variant, coding sequence variant |
rs121908618 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs121908619 |
C>A,T |
Pathogenic |
Stop gained, synonymous variant, coding sequence variant |
rs121908620 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs267606732 |
C>A,T |
Pathogenic |
Coding sequence variant, stop gained, missense variant |
rs267606733 |
C>G,T |
Pathogenic |
Coding sequence variant, missense variant |
rs267606734 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs267606735 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs747171013 |
G>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs769540174 |
G>-,GG |
Likely-pathogenic, pathogenic |
Coding sequence variant, frameshift variant |
rs771866012 |
C>G,T |
Pathogenic |
Coding sequence variant, missense variant |
rs1057520111 |
C>A,T |
Likely-pathogenic, uncertain-significance |
Missense variant, coding sequence variant |
rs1316347883 |
G>A,C |
Pathogenic |
Coding sequence variant, missense variant |
rs1416783446 |
C>T |
Pathogenic |
Coding sequence variant, stop gained |
rs1554817549 |
C>G |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1589509307 |
T>G |
Pathogenic |
Coding sequence variant, missense variant |
rs1589509884 |
G>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1589510055 |
GAA>- |
Pathogenic |
Inframe deletion, coding sequence variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
Q7LGC8 |
Protein name |
Carbohydrate sulfotransferase 3 (EC 2.8.2.17) (EC 2.8.2.21) (Chondroitin 6-O-sulfotransferase 1) (C6ST-1) (Chondroitin 6-sulfotransferase) (C6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 0) (GST-0) |
Protein function |
Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the transfer of sulfate to position 6 of the N-acetylgalactosamine (GalNAc) residue of chondroitin (PubMed:15215498, PubMed:9714738, PubMed:98838 |
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00685 |
Sulfotransfer_1 |
132 → 452 |
Sulfotransferase domain |
Domain |
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Sequence |
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Sequence length |
479 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Bicuspid aortic valve |
Bicuspid aortic valve |
rs1569484234, rs1569484208 |
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Brachydactyly |
Brachydactyly |
rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142 |
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Cutis laxa |
Cutis Laxa |
rs80356758, rs80356750, rs119489101, rs119489102, rs193302865, rs121918374, rs121918375, rs1598354372, rs1371235353, rs1598358449, rs121918376, rs121918377, rs121918378, rs137854453, rs1797225811, rs80356756, rs367543007, rs80356751, rs80356753, rs193302868, rs193302867, rs193302869, rs193302870, rs193302864, rs193302866, rs1566294545, rs397514683, rs794729201, rs752669339, rs863225044, rs863225045, rs886039351, rs745590426, rs144346996, rs1060505031, rs1028534806, rs1060505037, rs139751598, rs762218403, rs755867227, rs1555042727, rs888015688, rs1591064775, rs1598358440, rs752297179, rs1180294322 |
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Developmental delay |
Gross motor development delay |
rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074 |
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Glaucoma |
Glaucoma of childhood |
rs121918355, rs1566660365, rs1566635134, rs121918356, rs1566634475, rs28936700, rs55771538, rs28936701, rs104893622, rs55989760, rs72549387, rs104893628, rs2125316417, rs104893629, rs74315328, rs121909193, rs74315330, rs74315329, rs74315332, rs74315334, rs74315336, rs74315338, rs74315341, rs121909194, rs74315331, rs1558603396, rs387907175, rs587778873, rs587778875, rs104894979, rs137854895, rs766425037, rs72549380, rs148542782, rs541217363, rs753021890, rs771076928, rs56010818, rs777678299, rs1446110883, rs1573274915, rs1587545234, rs751768343, rs944452644 |
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Hydrocephalus |
Hydrocephalus |
rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546 |
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Larsen syndrome |
Larsen syndrome, recessive type, MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITH OR WITHOUT CONGENITAL HEART DEFECTS |
rs80356506, rs80356513, rs80356508, rs80356503, rs28933068, rs80356511, rs80356516, rs387906937, rs80356504, rs879255269, rs372487178, rs794727854, rs1553704446, rs377340567, rs868820857, rs1589510055 |
20830804 |
Left ventricular hypertrophy |
Left Ventricular Hypertrophy |
rs397516037 |
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Melnick-needles syndrome |
Melnick-Needles Syndrome |
rs28935472, rs28935473 |
30200136 |
Mitral valve prolapse |
Mitral Valve Prolapse Syndrome |
rs768737101 |
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Multiple epiphyseal dysplasia |
Multiple Epiphyseal Dysplasia |
rs786200881, rs104893915, rs104893919, rs104893916, rs386833492, rs104893924, rs104893645, rs104893637, rs28939677, rs104893641, rs137852654, rs193922900, rs137852655, rs869320730, rs28936368, rs752248403, rs312262900, rs386833495, rs386833497, rs386833499, rs200963884, rs149551600, rs397515546, rs786204675, rs886039282, rs1057517523, rs1057517496, rs1057517462, rs1057517504, rs763198695, rs1057517483, rs1057517461, rs1057517524, rs1057517514, rs1057517526, rs1057517495, rs1057517532, rs1057517471, rs1057517502, rs1057517511, rs1057517482, rs1057517530, rs1057517474, rs762137330, rs1057517513, rs1014317450, rs1554095084, rs769859976, rs1554095145, rs1554095356, rs1554095374, rs1554095137, rs1554095156, rs745774620, rs1554095364, rs1481910744, rs1554095097, rs1554095125, rs1554095154, rs769657401, rs1554095381, rs1554095167, rs1554095266, rs1225601391, rs1554095296, rs1554095395, rs1235928535, rs1568554988, rs1561822760, rs1601054002, rs1601057167, rs1601054715, rs2055184939 |
30200136 |
Osteochondrodysplasia |
Osteochondrodysplasias |
rs386833498, rs104893919, rs104893916, rs386833492, rs121908078, rs386833497, rs386833507, rs200963884, rs121908077, rs786204675, rs763198695, rs1554095433, rs766836061 |
30200136 |
Osteoporosis |
Osteoporosis |
rs72658152, rs72667023, rs587776916, rs72656370, rs768615287 |
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Pulmonary arterial hypertension |
Pulmonary arterial hypertension, Idiopathic pulmonary arterial hypertension |
rs121909288, rs137852741, rs137852742, rs137852743, rs137852744, rs137852745, rs137852746, rs137852748, rs137852749, rs137852750, rs137852751, rs137852753, rs863223423, rs863223426, rs863223424, rs863223408, rs869025366, rs876657748, rs886039506, rs886041324, rs1060502576, rs1060502581, rs1060502584, rs1085307149, rs1085307154, rs1085307157, rs1085307163, rs1085307169, rs1085307177, rs1085307180, rs1085307184, rs1085307188, rs1085307191, rs1085307203, rs1085307222, rs1085307223, rs1085307225, rs1085307229, rs1085307234, rs1085307246, rs1085307261, rs1085307267, rs576091247, rs200948870, rs1085307278, rs1085307282, rs1085307285, rs1085307290, rs1085307301, rs1085307306, rs1085307307, rs1085307308, rs1085307315, rs1085307316, rs1553509997, rs1085307324, rs1085307340, rs1085307349, rs1085307352, rs765887545, rs1085307183, rs1555208696, rs1592224412, rs1574415785, rs1574415799, rs1574462520, rs1085307197, rs1574464060, rs749485755, rs1574464121, rs1574464150, rs1574464160, rs1085307214, rs1574485996, rs1574486497, rs1574486566, rs1574488314, rs1574488346, rs1574488353, rs1574488357, rs1574488412, rs1414031345, rs1574488484, rs1574488490, rs863223419, rs1574489046, rs1574494632, rs1574494655, rs1574500018, rs1574505253, rs1574505321, rs371174955, rs1574506729, rs1574506732, rs1574506781, rs1574506790, rs1574506799, rs1574506914, rs1574506976, rs1574507076, rs1574507124, rs1574507215, rs1574507268, rs1574507272, rs1574507276, rs1574507290, rs1574507331, rs398123042, rs374644720, rs1588573831, rs1592222308, rs1592223392, rs756315327, rs1603248167, rs1397811125, rs1603255267, rs1603255327, rs1603255336, rs1603255339, rs754897911, rs1603256095, rs1085307155, rs1085307156, rs1574464226, rs1085307226, rs1574486038, rs1553508321, rs1574488277, rs1574488501, rs1574493841, rs1574499954 |
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Radioulnar synostosis |
Radioulnar Synostosis |
rs1595756416, rs1595756703, rs1231501584, rs1595756962, rs1595757203, rs1595763070, rs1595766210 |
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Schwartz-jampel syndrome |
Schwartz-Jampel Syndrome |
rs886039909, rs927473035, rs1572304438, rs1572356343 |
30200136 |
Scoliosis |
Scoliosis, unspecified |
rs1057518828, rs147296805, rs758163506, rs1555613564, rs1596852902, rs1596853067, rs1596853085 |
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Skeletal dysplasia |
CHST3-related skeletal dysplasia |
rs121912632, rs121912633, rs121912634, rs121912636, rs121912637, rs267607147, rs387906324, rs267607150, rs397514473, rs398123438, rs515726153, rs515726154, rs515726162, rs515726163, rs515726172, rs757011098 |
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Spondyloenchondrodysplasia |
Spondyloepiphyseal Dysplasia Tarda, X-Linked, Spondyloepiphyseal dysplasia, Omani type |
rs121908616, rs267606734, rs121908617, rs121908618, rs1589509884, rs121908619, rs121908620, rs145538723, rs267606733, rs267606732, rs587776752, rs121912870, rs121912871, rs121912875, rs121912880, rs121912881, rs786200938, rs397514718, rs786200939, rs397514719, rs397514720, rs397514723, rs397514724, rs786200943, rs747171013, rs886039542, rs1553658926, rs1553659131, rs1181638652, rs1553667072, rs1553669703, rs769540174, rs1554022725, rs1555168505, rs1316347883, rs771866012, rs1553151294, rs1416783446, rs1565460853, rs771258750, rs1226321681, rs1294100541, rs1564532120, rs113683179, rs1597675888, rs1597675890, rs1202786652, rs377527583, rs1603225182, rs2085516391, rs934768094, rs2058757423, rs1589509307, rs771336246 |
30200136, 20830804, 18513679, 15215498, 27604308 |
Spondyloepiphyseal dysplasia congenita |
Spondyloepiphyseal dysplasia, congenita |
rs1555164872, rs121912870, rs121912874, rs121912883, rs864621973, rs886042651, rs886042849, rs1085307657, rs1555168505, rs1025202963, rs1555167783, rs1565679062, rs1939205327 |
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Spondyloepiphyseal dysplasia |
Spondyloepiphyseal Dysplasia |
rs72555367, rs121908950, rs121908951, rs121908952, rs104893637, rs104893639, rs387906534, rs121913568, rs606231241, rs606231242, rs786200933, rs606231243, rs786200934, rs397515546, rs797045099, rs869312907, rs886041895, rs760093841, rs374379931, rs1471554906, rs1567185220, rs1567186585, rs1592198747, rs1239366051, rs1592197682 |
30200136 |
Ventricular septal defect |
Ventricular Septal Defects |
rs104894073, rs387906775 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Cubitus valgus |
Acquired cubitus valgus |
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Acquired kyphoscoliosis |
Acquired Kyphoscoliosis |
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Aortic valve insufficiency |
Aortic Valve Insufficiency |
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Aortic valve sclerosis |
Aortic Valve Stenosis |
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Arthropathy |
Arthropathy |
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Brachycephaly |
Brachycephaly |
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Chondrodystrophic myotonia |
Schwartz-Jampel Syndrome, Type 1 |
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30200136 |
Talipes equinovalgus |
Talipes Equinovalgus |
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Congenital clubfoot |
Congenital clubfoot |
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Congenital kyphoscoliosis |
Congenital kyphoscoliosis |
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Dwarfism |
Dwarfism |
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Dyschondroplasias |
Dyschondroplasias |
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30200136 |
Elbow flexion contracture |
Flexion contracture - elbow |
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Esotropia |
Esotropia |
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Frontal bossing |
Frontal bossing |
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Glaucoma, congenital |
Hydrophthalmos |
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High palate |
Byzanthine arch palate |
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Hyperopia |
Hyperopia |
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Microdontia |
Microdontia (disorder) |
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Microstomia |
Microstomia |
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Microtia |
Congenital small ears |
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Mitral valve stenosis |
Mitral Valve Stenosis |
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Motor delay |
Clumsiness - motor delay |
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Osteopenia |
Osteopenia |
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Patent foramen ovale |
Foramen Ovale, Patent |
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Pulmonary stenosis |
Pulmonary Stenosis |
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Rhizomelia |
Rhizomelia |
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Tricuspid valve insufficiency |
Tricuspid Valve Insufficiency |
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Tricuspid valve stenosis |
Tricuspid Valve Stenosis |
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Van buchem disease |
Van Buchem disease |
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30200136 |
Ventricular hypertrophy |
Ventricular hypertrophy |
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