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CHST3 (carbohydrate sulfotransferase 3)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9469
Gene nameGene Name - the full gene name approved by the HGNC.
Carbohydrate sulfotransferase 3
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
CHST3
SynonymsGene synonyms aliases
C6ST, C6ST1, HSD
ChromosomeChromosome number
10
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q22.1
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes an enzyme which catalyzes the sulfation of chondroitin, a proteoglycan found in the extracellular matrix and most cells which is involved in cell migration and differentiation. Mutations in this gene are associated with spondylepiphyseal
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28937593 G>A Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs121908616 T>C Pathogenic Missense variant, coding sequence variant
rs121908617 C>A,T Pathogenic Synonymous variant, missense variant, coding sequence variant
rs121908618 T>C Pathogenic Missense variant, coding sequence variant
rs121908619 C>A,T Pathogenic Stop gained, synonymous variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT023379 hsa-miR-122-5p Microarray 17612493
MIRT027845 hsa-miR-98-5p Microarray 19088304
MIRT659521 hsa-miR-519d-5p HITS-CLIP 23824327
MIRT659519 hsa-miR-5695 HITS-CLIP 23824327
MIRT659520 hsa-miR-3663-5p HITS-CLIP 23824327
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0001517 Function N-acetylglucosamine 6-O-sulfotransferase activity IBA 21873635
GO:0005802 Component Trans-Golgi network IBA 21873635
GO:0005975 Process Carbohydrate metabolic process IEA
GO:0006044 Process N-acetylglucosamine metabolic process IBA 21873635
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q7LGC8
Protein name Carbohydrate sulfotransferase 3 (EC 2.8.2.17) (EC 2.8.2.21) (Chondroitin 6-O-sulfotransferase 1) (C6ST-1) (Chondroitin 6-sulfotransferase) (C6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 0) (GST-0)
Protein function Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the transfer of sulfate to position 6 of the N-acetylgalactosamine (GalNAc) residue of chondroitin (PubMed:15215498, PubMed:9714738, PubMed:98838
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00685 Sulfotransfer_1
132 452
Sulfotransferase domain
Domain
Sequence
Sequence length 479
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   Chondroitin sulfate biosynthesis
Defective CHST3 causes SEDCJD
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Bicuspid aortic valve Bicuspid aortic valve rs1569484234, rs1569484208
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142
Cutis laxa Cutis Laxa rs80356758, rs80356750, rs119489101, rs119489102, rs193302865, rs121918374, rs121918375, rs1598354372, rs1371235353, rs1598358449, rs121918376, rs121918377, rs121918378, rs137854453, rs1797225811, rs80356756, rs367543007, rs80356751, rs80356753, rs193302868, rs193302867, rs193302869, rs193302870, rs193302864, rs193302866, rs1566294545, rs397514683, rs794729201, rs752669339, rs863225044, rs863225045, rs886039351, rs745590426, rs144346996, rs1060505031, rs1028534806, rs1060505037, rs139751598, rs762218403, rs755867227, rs1555042727, rs888015688, rs1591064775, rs1598358440, rs752297179, rs1180294322
Developmental delay Gross motor development delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Unknown
Disease name Disease term dbSNP ID References
Cubitus valgus Acquired cubitus valgus
Acquired kyphoscoliosis Acquired Kyphoscoliosis
Aortic valve insufficiency Aortic Valve Insufficiency
Aortic valve sclerosis Aortic Valve Stenosis

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