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PGAP3 (post-GPI attachment to proteins phospholipase 3)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
93210
Gene nameGene Name - the full gene name approved by the HGNC.
Post-GPI attachment to proteins phospholipase 3
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
PGAP3
SynonymsGene synonyms aliases
AGLA546, CAB2, PERLD1, PP1498, hCOS16
ChromosomeChromosome number
17
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q12
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a glycosylphosphatidylinositol (GPI)-specific phospholipase that primarily localizes to the Golgi apparatus. This ubiquitously expressed gene is predicted to encode a seven-transmembrane protein that removes unsaturated fatty acids from
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs144574243 C>A,T Pathogenic Splice donor variant, intron variant
rs183208638 G>A Conflicting-interpretations-of-pathogenicity 3 prime UTR variant, non coding transcript variant, genic downstream transcript variant
rs200598755 C>T Likely-pathogenic, pathogenic Non coding transcript variant, intron variant
rs202146344 G>A Pathogenic, uncertain-significance Intron variant, coding sequence variant, missense variant, 5 prime UTR variant, non coding transcript variant
rs371549948 G>A,C Pathogenic Intron variant, coding sequence variant, missense variant, 5 prime UTR variant, non coding transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT712655 hsa-miR-4311 HITS-CLIP 19536157
MIRT712654 hsa-miR-513c-5p HITS-CLIP 19536157
MIRT712653 hsa-miR-514b-5p HITS-CLIP 19536157
MIRT712655 hsa-miR-4311 HITS-CLIP 19536157
MIRT712654 hsa-miR-513c-5p HITS-CLIP 19536157
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0005515 Function Protein binding IPI 32814053
GO:0006505 Process GPI anchor metabolic process IMP 17021251
GO:0006506 Process GPI anchor biosynthetic process IBA 21873635
GO:0006506 Process GPI anchor biosynthetic process IMP 29374258
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q96FM1
Protein name GPI-specific phospholipase A2-like PGAP3 (EC 3.1.1.-) (COS16 homolog) (hCOS16) (Gene coamplified with ERBB2 protein) (PER1-like domain-containing protein 1) (Post-GPI attachment to proteins factor 3)
Protein function Involved in the fatty acid remodeling steps of GPI-anchor maturation where the unsaturated acyl chain at sn-2 of inositol phosphate is replaced by a saturated stearoyl chain (PubMed:17021251, PubMed:24439110). May catalyze the first step of the
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04080 Per1
54 306
Per1-like family
Family
Sequence
Sequence length 320
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
Metabolic pathways
 
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Asthma Asthma rs324981, rs121912630, rs150116809, rs4950928, rs708494, rs1581842283 20860503, 21804549
Autism Autistic behavior rs121964908, rs121912597, rs2710102, rs7794745, rs142990298, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699, rs1553510219, rs1684182454, rs1559060428, rs1553510677, rs1576352885, rs1574152522, rs1574152672, rs1696658542, rs1751123722, rs1750373491, rs1751075634
Congenital diaphragmatic hernia Congenital diaphragmatic hernia rs121908602, rs121908604, rs864309713, rs780263938, rs756636036, rs775394591
Developmental delay Global developmental delay, Profound global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Unknown
Disease name Disease term dbSNP ID References
Accessory nipple Accessory nipple
Bipolar disorder Bipolar Disorder 27329760
Brachycephaly Brachycephaly
Clinodactyly Clinodactyly of fingers, Clinodactyly

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