PAPSS2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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9060 |
Gene nameGene Name - the full gene name approved by the HGNC.
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3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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PAPSS2 |
SynonymsGene synonyms aliases
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ATPSK2, BCYM4, SK2 |
ChromosomeChromosome number
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10 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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10q23.2-q23.31 |
SummarySummary of gene provided in NCBI Entrez Gene.
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Sulfation is a common modification of endogenous (lipids, proteins, and carbohydrates) and exogenous (xenobiotics and drugs) compounds. In mammals, the sulfate source is 3`-phosphoadenosine 5`-phosphosulfate (PAPS), created from ATP and inorganic sulfate. |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs121908950 |
C>A |
Pathogenic |
Stop gained, coding sequence variant |
rs121908951 |
C>G |
Pathogenic |
Missense variant, coding sequence variant |
rs121908952 |
C>T |
Pathogenic |
Stop gained, coding sequence variant |
rs138943074 |
G>A |
Pathogenic, uncertain-significance |
Missense variant, coding sequence variant |
rs145242127 |
C>A,T |
Conflicting-interpretations-of-pathogenicity |
Synonymous variant, missense variant, coding sequence variant |
rs374379931 |
C>G |
Likely-pathogenic |
Coding sequence variant, stop gained |
rs606231241 |
->G |
Pathogenic |
Coding sequence variant, frameshift variant |
rs606231242 |
GTAGTGGAACTTCTGCAAG>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs606231243 |
->CGTA |
Pathogenic |
Coding sequence variant, frameshift variant |
rs786200933 |
AG>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs786200934 |
A>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs794727710 |
G>A,T |
Pathogenic |
Splice donor variant |
rs797045099 |
ATTCC>- |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
rs1471554906 |
TT>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1554869370 |
->C |
Likely-pathogenic |
Frameshift variant, coding sequence variant |
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miRNAmiRNA information provided by mirtarbase database.
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Transcription factors
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Transcription factor |
Regulation |
Reference |
SP2 |
Unknown |
11931653 |
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
O95340 |
Protein name |
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 (PAPS synthase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK 2) (SK2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (ATP-sulfurylase) (Sulfate adenylate transferase) (SAT); Adenylyl-sulfate kin |
Protein function |
Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the secon |
PDB |
2AX4
,
7FH3
,
7FHA
,
8I1N
,
8I1O
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Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF01583 |
APS_kinase |
41 → 199 |
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Domain |
PF14306 |
PUA_2 |
215 → 376 |
PUA-like domain |
Domain |
PF01747 |
ATP-sulfurylase |
384 → 607 |
ATP-sulfurylase |
Domain |
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Sequence |
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Sequence length |
614 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Brachydactyly |
Brachydactyly |
rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142 |
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Spondyloepimetaphyseal dysplasia |
Spondyloepimetaphyseal disorder |
rs121909497, rs121909499, rs879255602, rs878853267, rs779218846, rs878852980, rs878852981, rs1325869434, rs1565256477, rs1597675888, rs1597675890, rs1597676540, rs369033671 |
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Spondyloepiphyseal dysplasia |
Spondyloepimetaphyseal Dysplasia, Pakistani Type, Spondyloepimetaphyseal dysplasia, PAPSS2 type |
rs72555367, rs121908950, rs121908951, rs121908952, rs104893637, rs104893639, rs387906534, rs121913568, rs606231241, rs606231242, rs786200933, rs606231243, rs786200934, rs397515546, rs797045099, rs869312907, rs886041895, rs760093841, rs374379931, rs1471554906, rs1567185220, rs1567186585, rs1592198747, rs1239366051, rs1592197682 |
23633440, 22791835, 23824674, 19474428, 25594860, 9771708, 9714015 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Acne |
Acne |
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Acquired kyphoscoliosis |
Acquired Kyphoscoliosis |
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Brachyolmia |
Brachyolmia, Autosomal recessive brachyolmia |
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Congenital kyphoscoliosis |
Congenital kyphoscoliosis |
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Dwarfism |
Dwarfism |
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Hypoplasia of lower limb |
Hypoplasia of lower limb |
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Lumbar scoliosis |
Lumbar scoliosis |
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Precocious pubarche |
Precocious pubarche |
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Secondary physiologic amenorrhea |
Secondary physiologic amenorrhea |
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