GediPNet logo

ROGDI (rogdi atypical leucine zipper)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
79641
Gene nameGene Name - the full gene name approved by the HGNC.
Rogdi atypical leucine zipper
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
ROGDI
SynonymsGene synonyms aliases
KTZS, RAV2, ROGD1
ChromosomeChromosome number
16
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
16p13.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a protein of unknown function. Loss-of-function mutation in this gene cause Kohlschutter-Tonz syndrome. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2012]
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs138409264 C>T Conflicting-interpretations-of-pathogenicity, benign-likely-benign Non coding transcript variant, coding sequence variant, missense variant
rs150687774 G>A Conflicting-interpretations-of-pathogenicity, benign-likely-benign Coding sequence variant, non coding transcript variant, synonymous variant
rs372097881 G>A Pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs387907145 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs387907146 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT029066 hsa-miR-26b-5p Microarray 19088304
MIRT051133 hsa-miR-16-5p CLASH 23622248
MIRT439749 hsa-miR-127-5p HITS-CLIP 24374217
MIRT439749 hsa-miR-127-5p HITS-CLIP 24374217
MIRT1315099 hsa-miR-3141 CLIP-seq
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 17043677, 31413325, 32296183
GO:0005635 Component Nuclear envelope IDA 22482807
GO:0007420 Process Brain development IMP 25565929
GO:0008021 Component Synaptic vesicle IEA
GO:0008284 Process Positive regulation of cell population proliferation IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q9GZN7
Protein name Protein rogdi homolog
PDB 5XQH , 5XQI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10259 Rogdi_lz
18 276
Rogdi leucine zipper containing protein
Family
Sequence
Sequence length 287
Interactions View interactions
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Amelocerebrohypohidrotic syndrome Amelocerebrohypohidrotic syndrome rs764899074, rs387907145, rs749657986, rs786205119, rs387907146, rs786205124, rs772340154, rs1060502981, rs1555491350, rs372097881, rs1039568775, rs570952151, rs1596277148, rs754417953
Amelogenesis imperfecta Amelogenesis Imperfecta rs267607178, rs143816093, rs606231351, rs137854435, rs137854440, rs137854441, rs137854444, rs587776587, rs121908109, rs587776588, rs140213840, rs104894704, rs387906487, rs387906488, rs387906489, rs104894733, rs104894734, rs104894736, rs387906490, rs387906491, rs104894737, rs104894738, rs144411158, rs587776911, rs587776912, rs587776913, rs587776914, rs387907215, rs866941536, rs1560562738, rs1560562630, rs146645381, rs1560558455, rs587777515, rs587777516, rs587777530, rs139620139, rs587777531, rs587777535, rs587777536, rs587777537, rs606231462, rs1553275034, rs869320671, rs786201004, rs140015315, rs730882118, rs730880297, rs730880298, rs786204825, rs786204826, rs1555409827, rs1057517671, rs1057517672, rs556734208, rs146238585, rs202073531, rs1057519277, rs767907487, rs779823931, rs1060499539, rs1085307111, rs546603773, rs1553275070, rs1553275195, rs752102959, rs1554623490, rs1553888384, rs770804941, rs1553887511, rs557128345, rs1568724130, rs199527325, rs1603038146, rs773117913, rs1560973571, rs1560782372, rs1560980659, rs1560973467, rs772929908, rs762816338, rs1565222166, rs1595312054, rs1866200282, rs2086254952
Autism spectrum disorder Autism Spectrum Disorders rs724159978, rs75184679, rs119103221, rs9332964, rs121912562, rs1594344233, rs727504317, rs111033204, rs1801086, rs587784464, rs724159948, rs764659822, rs794727977, rs796052733, rs796052728, rs762292772, rs864321694, rs869312878, rs758432471, rs750896617, rs886039692, rs886039770, rs201037487, rs200483989, rs1057518198, rs1057517708, rs780267761, rs1555910143, rs1057519632, rs775225727, rs751037529, rs1064794848, rs1064795655, rs1131691548, rs1135401811, rs1553248081, rs1454466097, rs1554480537, rs1553578503, rs1553518509, rs774152851, rs1554481395, rs1554464807, rs1554401434, rs1452048149, rs370498156, rs756691187, rs1557863430, rs1557863440, rs1557863546, rs769581210, rs202098093, rs1276388879, rs778792467, rs760059077, rs373783340, rs1557867853, rs772572695, rs753214391, rs749270162, rs548226228, rs1557870645, rs1557874046, rs749548928, rs754532606, rs1557901347, rs1557902023, rs1557909572, rs574335012, rs1557909821, rs1372713010, rs561369202, rs1476293577, rs1557910728, rs1557911386, rs375045125, rs998675361, rs1557916296, rs1557935477, rs866632178, rs1561824498, rs1396313317, rs1564801388, rs1564801473, rs1564950387, rs1565527302, rs1569513495, rs1569305431, rs143944436, rs1563183492, rs1561846159, rs1565819425, rs1562957809, rs1585645641, rs1585016242, rs1595127294, rs1585667374, rs1585653028, rs1585653240, rs1592919048, rs1585645384, rs1789927813 31209396
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Unknown
Disease name Disease term dbSNP ID References
Cerebellar hypoplasia Cerebellar Hypoplasia
Cerebral atrophy Cerebral atrophy
Dementia Dementia
Dental enamel hypoplasia Dental Enamel Hypoplasia

| © 2021, Biomedical Informatics Centre, NIRRH |
ICMR-National Institute for Research in Reproductive Health, Jehangir Merwanji Street, Parel, Mumbai-400012
Tel: +91-22-24192104, Fax No: +91-22-24139412