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VLDLR (very low density lipoprotein receptor)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
7436
Gene nameGene Name - the full gene name approved by the HGNC.
Very low density lipoprotein receptor
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
VLDLR
SynonymsGene synonyms aliases
CAMRQ1, CARMQ1, CHRMQ1, VLDL-R, VLDLRCH
ChromosomeChromosome number
9
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9p24.2
SummarySummary of gene provided in NCBI Entrez Gene.
The low density lipoprotein receptor (LDLR) gene family consists of cell surface proteins involved in receptor-mediated endocytosis of specific ligands. This gene encodes a lipoprotein receptor that is a member of the LDLR family and plays important roles
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs80338905 C>A,T Pathogenic Coding sequence variant, non coding transcript variant, synonymous variant, stop gained
rs80338906 T>- Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
rs80338907 C>A,T Pathogenic Coding sequence variant, non coding transcript variant, synonymous variant, stop gained
rs116306908 A>G Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, non coding transcript variant, missense variant
rs139671268 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, non coding transcript variant, missense variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018291 hsa-miR-335-5p Microarray 18185580
MIRT020261 hsa-miR-130b-3p Sequencing 20371350
MIRT028137 hsa-miR-93-5p Sequencing 20371350
MIRT054784 hsa-miR-135a-5p Luciferase reporter assay, qRT-PCR, Western blot 24903309
MIRT713315 hsa-miR-100-3p HITS-CLIP 19536157
Transcription factors
Transcription factor Regulation Reference
CEBPA Unknown 10064725
HIC1 Repression 24076391
PPARG Activation 19861583
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005041 Function Low-density lipoprotein particle receptor activity TAS 10380922
GO:0005509 Function Calcium ion binding IEA
GO:0005515 Function Protein binding IPI 8083232, 10571240, 10571241, 17330141, 17548821, 20223215
GO:0005765 Component Lysosomal membrane TAS
GO:0005886 Component Plasma membrane TAS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P98155
Protein name Very low-density lipoprotein receptor (VLDL receptor) (VLDL-R)
Protein function Multifunctional cell surface receptor that binds VLDL and transports it into cells by endocytosis and therefore plays an important role in energy metabolism. Also binds to a wide range of other molecules including Reelin/RELN or apolipoprotein E
PDB 1V9U , 3DPR , 6BYV , 8IHP , 8UA4 , 8UA8 , 8UFB , 8UFC , 8X0K , 8X0L , 8X0M , 8XI4 , 8XI5 , 8YS2 , 8YS4 , 8YVZ , 8YW0 , 8YW1 , 8YW2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00057 Ldl_recept_a
31 67
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
70 108
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
111 149
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
152 188
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
191 229
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
237 273
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
276 312
Low-density lipoprotein receptor domain class A
Repeat
PF00057 Ldl_recept_a
316 355
Low-density lipoprotein receptor domain class A
Repeat
PF14670 FXa_inhibition
360 394
Domain
PF07645 EGF_CA
396 434
Calcium-binding EGF domain
Domain
PF00058 Ldl_recept_b
481 522
Low-density lipoprotein receptor repeat class B
Repeat
PF00058 Ldl_recept_b
525 565
Low-density lipoprotein receptor repeat class B
Repeat
PF00058 Ldl_recept_b
568 609
Low-density lipoprotein receptor repeat class B
Repeat
PF00058 Ldl_recept_b
612 654
Low-density lipoprotein receptor repeat class B
Repeat
PF00058 Ldl_recept_b
655 695
Low-density lipoprotein receptor repeat class B
Repeat
PF14670 FXa_inhibition
706 749
Domain
Sequence
MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGRCITLLWKCDGDEDCVD
GSDEKNC
VKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDESPEQCHMRTCRIHEISC
GAHSTQCIPVSWRCDGENDCDSGEDEENC
GNITCSPDEFTCSSGRCISRNFVCNGQDDCS
DGSDELDC
APPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCP
ASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNC
PSRTCRPDQFECEDGSCIHGSRQCNGI
RDCVDGSDEVNC
KNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHINEC
LVNNGGCSHICKDLVIGYECDCAAGFELIDRKTC
GDIDECQNPGICSQICINLKGGYKCE
CSRGYQMDLATGVC
KAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAA
QKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVA
TLDGTKRKFLFNSDLREPASIAVDP
LSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTADIQ
WPNGITLDL
IKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWI
DGENEAVYGANKFTGSELATLVNNLNDAQDIIVYH
ELVQPSGKNWCEEDMENGGCEYLCL
PAPQINDHSPKYTCSCPSGYNVEENGRDC
QSTATTVTYSETKDTNTTEISATSGLVPGGI
NVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKT
TEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA
Sequence length 873
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Spinocerebellar ataxia
Lipid and atherosclerosis
  Reelin signalling pathway
VLDLR internalisation and degradation
VLDL clearance
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Autism Autistic Disorder rs121964908, rs121912597, rs2710102, rs7794745, rs142990298, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699, rs1553510219, rs1684182454, rs1559060428, rs1553510677, rs1576352885, rs1574152522, rs1574152672, rs1696658542, rs1751123722, rs1750373491, rs1751075634 15820235
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322, rs121917775, rs121917735, rs121917736, rs137853199, rs137853200, rs121917867, rs121917869, rs121913555, rs104893736, rs121909595, rs121909596, rs121909597, rs28931605, rs121909598, rs104893618, rs1695062782, rs74315486, rs74315487, rs74315490, rs74315489, rs745938679, rs1566402656, rs74315439, rs74315441, rs121912973, rs121917823, rs1593332981, rs121917825, rs121917827, rs113994108, rs387906963, rs387906964, rs1240503246, rs387906965, rs387906966, rs750207077, rs387907336, rs387907337, rs387907342, rs140332366, rs397514703, rs398122937, rs398122378, rs398122392, rs398122944, rs137853924, rs398122947, rs397515623, rs397515624, rs397515625, rs397515626, rs398122948, rs587778872, rs398123066, rs587777601, rs370424081, rs786205221, rs786205222, rs864309684, rs864309688, rs864309701, rs864309689, rs864309690, rs864309681, rs864309686, rs864309696, rs864309693, rs864309687, rs864309691, rs864309692, rs864309695, rs864309678, rs864309685, rs864309700, rs864309698, rs864309683, rs864309682, rs864309679, rs111534978, rs864309680, rs864309702, rs864622780, rs756898971, rs869312732, rs775038545, rs878852983, rs1114167312, rs1114167313, rs1114167314, rs1114167315, rs1114167307, rs886041410, rs886041412, rs1057518738, rs1057517926, rs1057518878, rs1057519616, rs12799308, rs1064793935, rs1064797219, rs1085307126, rs1085307127, rs765628635, rs1114167427, rs1114167433, rs1554744860, rs1554743428, rs747093432, rs1411557416, rs1555179713, rs1481963503, rs1555549755, rs1456161420, rs1555547008, rs1555889308, rs1555888762, rs766522434, rs1264025914, rs1553585262, rs1567671947, rs1337897299, rs764945940, rs1307969607, rs949335475, rs1184095219, rs776129797, rs1569203234, rs1567668570, rs749141857, rs764098604, rs1184398243, rs1578956689, rs1568480054, rs1564745688, rs1564722302, rs1564723150, rs1571175950, rs1569602837, rs1576552712, rs1575369255, rs981126461, rs1570403798, rs200557771, rs1477743112, rs1651879427, rs1651881222, rs1651919374, rs2024441691, rs148284531, rs1246080692
Cerebellar ataxia, mental retardation, and dysequilibrium syndrome Cerebellar Ataxia, Mental Retardation, And Dysequilibrium Syndrome 1 rs80338907, rs80338906, rs267606695, rs80338905, rs387906598, rs587776906, rs546968533, rs398122380, rs397514750, rs267603791, rs730882206, rs770279237, rs797046092, rs770269674, rs138358708, rs1064793377, rs755133567, rs1156904586, rs79267946, rs1563390893, rs1563764078, rs1304109530, rs1593410369, rs1593576872, rs1593326999, rs2039720333 18326629, 18364738, 16080122
Cerebral palsy Cerebral Palsy rs121918149, rs75184679, rs730880264, rs587777428, rs797045067, rs767399782, rs564185858, rs886039513
Unknown
Disease name Disease term dbSNP ID References
Cerebellar atrophy Cerebellar atrophy
Cerebellar hypoplasia Cerebellar Hypoplasia 16080122, 18364738
Dwarfism Dwarfism
Dysarthria Dysarthria

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