Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
7314 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Ubiquitin B |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
UBB |
SynonymsGene synonyms aliases
|
HEL-S-50 |
ChromosomeChromosome number
|
17 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
17p11.2 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
This gene encodes ubiquitin, one of the most conserved proteins known. Ubiquitin has a major role in targeting cellular proteins for degradation by the 26S proteosome. It is also involved in the maintenance of chromatin structure, the regulation of gene e |
miRNAmiRNA information provided by mirtarbase database.
|
|
Transcription factors
|
Transcription factor |
Regulation |
Reference |
HSF1 |
Unknown |
20692357 |
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000122 |
Process |
Negative regulation of transcription by RNA polymerase II |
TAS |
|
GO:0000187 |
Process |
Activation of MAPK activity |
TAS |
|
GO:0000209 |
Process |
Protein polyubiquitination |
TAS |
|
GO:0000715 |
Process |
Nucleotide-excision repair, DNA damage recognition |
TAS |
|
GO:0000717 |
Process |
Nucleotide-excision repair, DNA duplex unwinding |
TAS |
|
GO:0002755 |
Process |
MyD88-dependent toll-like receptor signaling pathway |
TAS |
|
GO:0002756 |
Process |
MyD88-independent toll-like receptor signaling pathway |
TAS |
|
GO:0005515 |
Function |
Protein binding |
IPI |
14755250, 14764729, 15039775, 15143060, 15308666, 16189514, 16286470, 16499958, 17310990, 17662948, 17719543, 18029035, 18313049, 20924359, 21516116, 24981860, 28514442, 32296183, 32814053 |
GO:0005615 |
Component |
Extracellular space |
HDA |
16502470 |
GO:0005634 |
Component |
Nucleus |
HDA |
21630459 |
GO:0005634 |
Component |
Nucleus |
IBA |
21873635 |
GO:0005654 |
Component |
Nucleoplasm |
TAS |
|
GO:0005737 |
Component |
Cytoplasm |
IBA |
21873635 |
GO:0005739 |
Component |
Mitochondrion |
IDA |
17571083 |
GO:0005741 |
Component |
Mitochondrial outer membrane |
TAS |
|
GO:0005789 |
Component |
Endoplasmic reticulum membrane |
TAS |
|
GO:0005829 |
Component |
Cytosol |
TAS |
|
GO:0005886 |
Component |
Plasma membrane |
TAS |
|
GO:0006283 |
Process |
Transcription-coupled nucleotide-excision repair |
TAS |
|
GO:0006294 |
Process |
Nucleotide-excision repair, preincision complex assembly |
TAS |
|
GO:0006296 |
Process |
Nucleotide-excision repair, DNA incision, 5'-to lesion |
TAS |
|
GO:0006297 |
Process |
Nucleotide-excision repair, DNA gap filling |
TAS |
|
GO:0006625 |
Process |
Protein targeting to peroxisome |
TAS |
|
GO:0007141 |
Process |
Male meiosis I |
IEA |
|
GO:0007144 |
Process |
Female meiosis I |
IEA |
|
GO:0007179 |
Process |
Transforming growth factor beta receptor signaling pathway |
TAS |
|
GO:0007249 |
Process |
I-kappaB kinase/NF-kappaB signaling |
TAS |
|
GO:0007254 |
Process |
JNK cascade |
TAS |
|
GO:0008585 |
Process |
Female gonad development |
IEA |
|
GO:0010008 |
Component |
Endosome membrane |
TAS |
|
GO:0016055 |
Process |
Wnt signaling pathway |
TAS |
|
GO:0016197 |
Process |
Endosomal transport |
TAS |
|
GO:0016567 |
Process |
Protein ubiquitination |
IBA |
21873635 |
GO:0016567 |
Process |
Protein ubiquitination |
TAS |
|
GO:0016579 |
Process |
Protein deubiquitination |
TAS |
|
GO:0019058 |
Process |
Viral life cycle |
TAS |
|
GO:0019068 |
Process |
Virion assembly |
TAS |
|
GO:0019221 |
Process |
Cytokine-mediated signaling pathway |
TAS |
|
GO:0019941 |
Process |
Modification-dependent protein catabolic process |
IBA |
21873635 |
GO:0019985 |
Process |
Translesion synthesis |
TAS |
|
GO:0021888 |
Process |
Hypothalamus gonadotrophin-releasing hormone neuron development |
IEA |
|
GO:0030512 |
Process |
Negative regulation of transforming growth factor beta receptor signaling pathway |
TAS |
|
GO:0030666 |
Component |
Endocytic vesicle membrane |
TAS |
|
GO:0031145 |
Process |
Anaphase-promoting complex-dependent catabolic process |
TAS |
|
GO:0031386 |
Function |
Protein tag |
IBA |
21873635 |
GO:0031398 |
Process |
Positive regulation of protein ubiquitination |
IDA |
24660806 |
GO:0031625 |
Function |
Ubiquitin protein ligase binding |
IBA |
21873635 |
GO:0031982 |
Component |
Vesicle |
HDA |
19190083 |
GO:0033683 |
Process |
Nucleotide-excision repair, DNA incision |
TAS |
|
GO:0035666 |
Process |
TRIF-dependent toll-like receptor signaling pathway |
TAS |
|
GO:0036297 |
Process |
Interstrand cross-link repair |
TAS |
|
GO:0042276 |
Process |
Error-prone translesion synthesis |
TAS |
|
GO:0042769 |
Process |
DNA damage response, detection of DNA damage |
TAS |
|
GO:0043005 |
Component |
Neuron projection |
IDA |
17571083 |
GO:0043025 |
Component |
Neuronal cell body |
IDA |
17571083 |
GO:0043065 |
Process |
Positive regulation of apoptotic process |
TAS |
|
GO:0043066 |
Process |
Negative regulation of apoptotic process |
TAS |
|
GO:0043488 |
Process |
Regulation of mRNA stability |
TAS |
|
GO:0043657 |
Component |
Host cell |
IEA |
|
GO:0044267 |
Process |
Cellular protein metabolic process |
TAS |
|
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
TAS |
|
GO:0047497 |
Process |
Mitochondrion transport along microtubule |
IDA |
17571083 |
GO:0048812 |
Process |
Neuron projection morphogenesis |
IMP |
17571083 |
GO:0051092 |
Process |
Positive regulation of NF-kappaB transcription factor activity |
TAS |
|
GO:0051403 |
Process |
Stress-activated MAPK cascade |
TAS |
|
GO:0051881 |
Process |
Regulation of mitochondrial membrane potential |
IDA |
17571083 |
GO:0055085 |
Process |
Transmembrane transport |
TAS |
|
GO:0060613 |
Process |
Fat pad development |
IEA |
|
GO:0061024 |
Process |
Membrane organization |
TAS |
|
GO:0061136 |
Process |
Regulation of proteasomal protein catabolic process |
IDA |
17571083 |
GO:0061418 |
Process |
Regulation of transcription from RNA polymerase II promoter in response to hypoxia |
TAS |
|
GO:0070062 |
Component |
Extracellular exosome |
HDA |
23533145 |
GO:0070423 |
Process |
Nucleotide-binding oligomerization domain containing signaling pathway |
TAS |
|
GO:0070498 |
Process |
Interleukin-1-mediated signaling pathway |
TAS |
|
GO:0070911 |
Process |
Global genome nucleotide-excision repair |
TAS |
|
GO:0070987 |
Process |
Error-free translesion synthesis |
TAS |
|
GO:0072520 |
Process |
Seminiferous tubule development |
IEA |
|
GO:0075733 |
Process |
Intracellular transport of virus |
TAS |
|
GO:0097009 |
Process |
Energy homeostasis |
IEA |
|
GO:1901214 |
Process |
Regulation of neuron death |
IDA |
17571083 |
GO:1902255 |
Process |
Positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator |
IDA |
17571083 |
GO:1902527 |
Process |
Positive regulation of protein monoubiquitination |
IMP |
24660806 |
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
P0CG47 |
Protein name |
Polyubiquitin-B [Cleaved into: Ubiquitin] |
Protein function |
[Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys re |
PDB |
2KHW
,
2MBB
,
2MRO
,
2MSG
,
2N13
,
4UEL
,
4UF6
,
4WHV
,
4WLR
,
4WUR
,
4XOF
,
4ZFR
,
4ZFT
,
4ZPZ
,
4ZUX
,
5BNB
,
5CAW
,
5CRA
,
5CVM
,
5CVN
,
5CVO
,
5D0K
,
5D0M
,
5DFL
,
5DK8
,
5E6J
,
5EDV
,
5EMZ
,
5EYA
,
5GJQ
,
5GO7
,
5GO8
,
5GOB
,
5GOC
,
5GOD
,
5GOG
,
5GOH
,
5GOI
,
5GOJ
,
5GOK
,
5H7S
,
5IBK
,
5IFR
,
5JBY
,
5JG6
,
5JP3
,
5JTJ
,
5JTV
,
5K9P
,
5KGF
,
5KHY
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00240 |
ubiquitin |
3 → 74 |
Ubiquitin family |
Domain |
PF00240 |
ubiquitin |
79 → 150 |
Ubiquitin family |
Domain |
PF00240 |
ubiquitin |
155 → 226 |
Ubiquitin family |
Domain |
|
Sequence |
|
Sequence length |
229 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Hearing loss |
Conductive hearing loss |
rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359, rs180177151, rs180177154, rs180177153, rs35689081, rs35887622, rs80338944, rs104894396, rs104894398, rs80338947, rs80338948, rs80338942, rs104894402, rs104894403, rs80338945, rs28931594, rs80338940, rs80338941, rs80356590, rs80338950, rs387906706, rs387906707, rs387906708, rs398122848, rs387907016, rs587776894, rs387907088, rs397515411, rs370965183, rs398122930, rs199897298, rs111033187, rs111033448, rs199606180, rs111033284, rs397516413, rs111033305, rs111033220, rs111033256, rs111033297, rs111033253, rs104894408, rs111033295, rs397516874, rs76434661, rs111033335, rs397517323, rs111033247, rs367928692, rs374793617, rs143939430, rs397515605, rs80338939, rs200656442, rs779748859, rs587781261, rs587781262, rs143343083, rs200147906, rs730880338, rs797044491, rs146281367, rs756484720, rs869025593, rs201306709, rs540895576, rs777777359, rs879255246, rs1554358720, rs142498437, rs377145777, rs1057517519, rs779077039, rs952741388, rs1060499797, rs764139009, rs1060499590, rs1064794012, rs1064797115, rs756790858, rs775633137, rs1554952443, rs1554952193, rs782063761, rs1199012623, rs756147087, rs1555648043, rs1555661490, rs1553196233, rs781546107, rs111033190, rs775428246, rs782539587, rs537227442, rs148695069, rs1554835827, rs953422571, rs1554834186, rs1554834161, rs1554835103, rs1554577339, rs1554577402, rs768471577, rs782279338, rs781951909, rs998045226, rs375759781, rs755804651, rs1557458426, rs767797828, rs538027448, rs1559366084, rs367688416, rs1558480402, rs1558490542, rs1559870857, rs1560690591, rs1561299289, rs1562817224, rs1562817529, rs1562822565, rs1562835391, rs1564113368, rs1564554255, rs773851192, rs1564555240, rs761261855, rs1564805114, rs1565522273, rs1565127413, rs781790246, rs1565430886, rs1565469959, rs746667217, rs1565819402, rs1565855932, rs150529554, rs1567939793, rs201866631, rs754472294, rs1559372512, rs1558464965, rs1558488902, rs775062249, rs1226171550, rs1561590396, rs765574676, rs762876554, rs757327146, rs1564949059, rs1565519673, rs368050948, rs1565541888, rs781989117, rs1565402473, rs750358148, rs1386887007, rs1209665716, rs1567641234, rs1237955948, rs1569042782, rs752672077, rs146689036, rs1560070780, rs149712664, rs1564556995, rs762226905, rs773573968, rs1568528171, rs1198256157, rs377267777, rs370564476, rs1577876794, rs747787770, rs759432278, rs1043716893, rs1581138934, rs2033773650, rs1421964916, rs771766431, rs780917129, rs1895773215, rs1895769400, rs761543680, rs1565920060 |
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|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Cleft soft palate |
Cleft Soft Palate |
|
17468296 |
Cleft uvula |
Cleft uvula |
|
17468296 |
Hypoplasia of the maxilla |
Hypoplasia of the maxilla |
|
|
Oropharyngeal dysphagia |
Oropharyngeal Dysphagia |
|
|
Otitis media |
Recurrent otitis media |
rs601338, rs1047781, rs1800028 |
|
Receptive language delay |
Receptive language delay |
|
|
Submucosal cleft palate |
Submucous cleft of hard palate, Submucous cleft palate |
|
17468296 |
Submucous cleft of soft and hard palate |
Submucous cleft soft palate |
|
|
Velopharyngeal insufficiency |
Velopharyngeal Insufficiency |
|
|
|
|
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