Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
7188 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
TNF receptor associated factor 5 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
TRAF5 |
SynonymsGene synonyms aliases
|
MGC:39780, RNF84 |
ChromosomeChromosome number
|
1 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
1q32.3 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
The scaffold protein encoded by this gene is a member of the tumor necrosis factor receptor-associated factor (TRAF) protein family and contains a meprin and TRAF homology (MATH) domain, a RING-type zinc finger, and two TRAF-type zinc fingers. TRAF protei |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs756183569 |
AGAG>- |
Likely-pathogenic |
Frameshift variant, coding sequence variant, genic downstream transcript variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0004842 |
Function |
Ubiquitin-protein transferase activity |
IBA |
21873635 |
GO:0005164 |
Function |
Tumor necrosis factor receptor binding |
IBA |
21873635 |
GO:0005515 |
Function |
Protein binding |
IPI |
9153189, 9162022, 15121867, 21516116, 21822258, 22493164, 25241761, 25416956, 27107012, 28514442, 32296183, 32814053 |
GO:0005813 |
Component |
Centrosome |
IDA |
21399614 |
GO:0005829 |
Component |
Cytosol |
IDA |
15121867 |
GO:0006915 |
Process |
Apoptotic process |
IEA |
|
GO:0007165 |
Process |
Signal transduction |
TAS |
9511754 |
GO:0008270 |
Function |
Zinc ion binding |
IEA |
|
GO:0008284 |
Process |
Positive regulation of cell population proliferation |
IEA |
|
GO:0009898 |
Component |
Cytoplasmic side of plasma membrane |
IBA |
21873635 |
GO:0009898 |
Component |
Cytoplasmic side of plasma membrane |
ISS |
|
GO:0031625 |
Function |
Ubiquitin protein ligase binding |
IBA |
21873635 |
GO:0031625 |
Function |
Ubiquitin protein ligase binding |
IPI |
11279055 |
GO:0031996 |
Function |
Thioesterase binding |
IBA |
21873635 |
GO:0031996 |
Function |
Thioesterase binding |
IPI |
11279055 |
GO:0033209 |
Process |
Tumor necrosis factor-mediated signaling pathway |
IBA |
21873635 |
GO:0035631 |
Component |
CD40 receptor complex |
ISS |
|
GO:0042802 |
Function |
Identical protein binding |
IPI |
22493164, 25416956, 32296183 |
GO:0042981 |
Process |
Regulation of apoptotic process |
IEA |
|
GO:0043122 |
Process |
Regulation of I-kappaB kinase/NF-kappaB signaling |
IBA |
21873635 |
GO:0043123 |
Process |
Positive regulation of I-kappaB kinase/NF-kappaB signaling |
IEP |
12761501 |
GO:0046330 |
Process |
Positive regulation of JNK cascade |
IBA |
21873635 |
GO:0051091 |
Process |
Positive regulation of DNA-binding transcription factor activity |
IMP |
12296995 |
GO:0051092 |
Process |
Positive regulation of NF-kappaB transcription factor activity |
IMP |
12296995, 15121867 |
GO:0070534 |
Process |
Protein K63-linked ubiquitination |
IBA |
21873635 |
GO:0098802 |
Component |
Plasma membrane signaling receptor complex |
IBA |
21873635 |
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
O00463 |
Protein name |
TNF receptor-associated factor 5 (RING finger protein 84) |
Protein function |
Adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases. Mediates activation of NF-kappa-B and probably |
PDB |
7L3L
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00097 |
zf-C3HC4 |
45 → 83 |
Zinc finger, C3HC4 type (RING finger) |
Domain |
PF02176 |
zf-TRAF |
128 → 183 |
TRAF-type zinc finger |
Family |
PF02176 |
zf-TRAF |
183 → 241 |
TRAF-type zinc finger |
Family |
|
Sequence |
|
Sequence length |
557 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Diffuse lymphoma |
Diffuse Large B-Cell Lymphoma |
rs121912651, rs121913289, rs121913293, rs878854402, rs869025340, rs1349928568, rs1569115687, rs121913291 |
|
Glioma |
Glioma |
rs121909219, rs121909224, rs587776667, rs587776671, rs121909239, rs121909241, rs28933368, rs121913500, rs55863639, rs786201995, rs786202517, rs786201044, rs398123317, rs1057518425, rs121913499, rs1060500122, rs781647403, rs1060500126, rs1554897889, rs1114167629, rs1114167656, rs587782603, rs1554893824, rs1554900615, rs1564568660, rs786204900, rs762518389, rs1339631701 |
19578366 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Central nervous system neoplasms |
Central Nervous System Neoplasms |
|
19578366 |
|