Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
7187 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
TNF receptor associated factor 3 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
TRAF3 |
SynonymsGene synonyms aliases
|
CAP-1, CAP1, CD40bp, CRAF1, IIAE5, IMD132A, IMD132B, LAP1, RNF118 |
ChromosomeChromosome number
|
14 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
14q32.32 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
The protein encoded by this gene is a member of the TNF receptor associated factor (TRAF) protein family. TRAF proteins associate with, and mediate the signal transduction from, members of the TNF receptor (TNFR) superfamily. This protein participates in |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs143813189 |
C>T |
Risk-factor, likely-benign |
Coding sequence variant, missense variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0001817 |
Process |
Regulation of cytokine production |
ISS |
|
GO:0002224 |
Process |
Toll-like receptor signaling pathway |
ISS |
|
GO:0004842 |
Function |
Ubiquitin-protein transferase activity |
IBA |
21873635 |
GO:0004842 |
Function |
Ubiquitin-protein transferase activity |
TAS |
|
GO:0005164 |
Function |
Tumor necrosis factor receptor binding |
IBA |
21873635 |
GO:0005164 |
Function |
Tumor necrosis factor receptor binding |
IPI |
11728344 |
GO:0005515 |
Function |
Protein binding |
IPI |
7527023, 10791955, 12005438, 12270937, 14743216, 15280356, 19419966, 19893624, 20080758, 20138174, 20174559, 20732415, 21903422, 23153539, 23333941, 23871208, 25241761, 27980081, 28514442, 30561431, 30833792, 31980649, 32296183, 32514408 |
GO:0005739 |
Component |
Mitochondrion |
IEA |
|
GO:0005768 |
Component |
Endosome |
IEA |
|
GO:0005829 |
Component |
Cytosol |
TAS |
|
GO:0006915 |
Process |
Apoptotic process |
IEA |
|
GO:0007165 |
Process |
Signal transduction |
TAS |
7530216 |
GO:0008063 |
Process |
Toll signaling pathway |
IEA |
|
GO:0008270 |
Function |
Zinc ion binding |
IEA |
|
GO:0009898 |
Component |
Cytoplasmic side of plasma membrane |
IBA |
21873635 |
GO:0009898 |
Component |
Cytoplasmic side of plasma membrane |
ISS |
|
GO:0016579 |
Process |
Protein deubiquitination |
TAS |
|
GO:0019901 |
Function |
Protein kinase binding |
IEA |
|
GO:0019903 |
Function |
Protein phosphatase binding |
IPI |
23871208 |
GO:0030162 |
Process |
Regulation of proteolysis |
IMP |
20185819 |
GO:0031625 |
Function |
Ubiquitin protein ligase binding |
IBA |
21873635 |
GO:0031625 |
Function |
Ubiquitin protein ligase binding |
IPI |
11279055 |
GO:0031996 |
Function |
Thioesterase binding |
IPI |
11279055 |
GO:0032088 |
Process |
Negative regulation of NF-kappaB transcription factor activity |
IBA |
21873635 |
GO:0032088 |
Process |
Negative regulation of NF-kappaB transcription factor activity |
IMP |
20185819 |
GO:0032648 |
Process |
Regulation of interferon-beta production |
ISS |
|
GO:0033209 |
Process |
Tumor necrosis factor-mediated signaling pathway |
IBA |
21873635 |
GO:0033209 |
Process |
Tumor necrosis factor-mediated signaling pathway |
IMP |
20185819 |
GO:0033209 |
Process |
Tumor necrosis factor-mediated signaling pathway |
TAS |
|
GO:0035631 |
Component |
CD40 receptor complex |
ISS |
|
GO:0035666 |
Process |
TRIF-dependent toll-like receptor signaling pathway |
TAS |
|
GO:0042802 |
Function |
Identical protein binding |
IPI |
32296183 |
GO:0042981 |
Process |
Regulation of apoptotic process |
IEA |
|
GO:0043122 |
Process |
Regulation of I-kappaB kinase/NF-kappaB signaling |
IBA |
21873635 |
GO:0045087 |
Process |
Innate immune response |
IEA |
|
GO:0046330 |
Process |
Positive regulation of JNK cascade |
IBA |
21873635 |
GO:0050688 |
Process |
Regulation of defense response to virus |
ISS |
|
GO:0070534 |
Process |
Protein K63-linked ubiquitination |
IBA |
21873635 |
GO:0098802 |
Component |
Plasma membrane signaling receptor complex |
IBA |
21873635 |
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
Q13114 |
Protein name |
TNF receptor-associated factor 3 (EC 2.3.2.27) (CD40 receptor-associated factor 1) (CRAF1) (CD40-binding protein) (CD40BP) (LMP1-associated protein 1) (LAP1) (RING-type E3 ubiquitin transferase TRAF3) |
Protein function |
Cytoplasmic E3 ubiquitin ligase that regulates various signaling pathways, such as the NF-kappa-B, mitogen-activated protein kinase (MAPK) and interferon regulatory factor (IRF) pathways, and thus controls a lot of biological processes in both i |
PDB |
1FLK
,
1FLL
,
1KZZ
,
1L0A
,
1RF3
,
1ZMS
,
2ECY
,
2GKW
,
8T5P
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF02176 |
zf-TRAF |
136 → 192 |
TRAF-type zinc finger |
Family |
PF02176 |
zf-TRAF |
192 → 251 |
TRAF-type zinc finger |
Family |
|
Sequence |
|
Sequence length |
568 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
|
|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Asthma |
Childhood asthma |
rs324981, rs121912630, rs150116809, rs4950928, rs708494, rs1581842283 |
30929738 |
Multiple sclerosis |
Multiple Sclerosis |
rs104895219, rs483353022, rs483353023, rs483353028, rs483353029, rs483353024, rs483353030, rs3207617, rs483353031, rs483353032, rs483353033, rs483353034, rs483353035, rs483353036, rs483353039, rs483353038, rs61731956, rs568165874, rs767480544 |
24076602 |
|