THRA (thyroid hormone receptor alpha)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
7067 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Thyroid hormone receptor alpha |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
THRA |
SynonymsGene synonyms aliases
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AR7, CHNG6, EAR7, ERB-T-1, ERBA, ERBA1, NR1A1, THRA1, THRA2, THRalpha, THRalpha1, THRalpha2, TRalpha, TRalpha1, TRalpha2, c-ERBA-1, c-erbA |
ChromosomeChromosome number
|
17 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
17q21.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene is a nuclear hormone receptor for triiodothyronine. It is one of the several receptors for thyroid hormone, and has been shown to mediate the biological activities of thyroid hormone. Knockout studies in mice suggest that |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs137853162 |
G>T |
Pathogenic |
Coding sequence variant, missense variant |
rs137853163 |
G>C |
Pathogenic |
Coding sequence variant, missense variant |
rs199530759 |
G>A |
Pathogenic, benign |
Splice acceptor variant |
rs746765465 |
C>- |
Pathogenic |
Coding sequence variant, frameshift variant, intron variant |
rs876657394 |
C>A |
Pathogenic |
Intron variant, stop gained, coding sequence variant |
rs876657395 |
G>A |
Pathogenic |
Missense variant, intron variant, coding sequence variant |
rs876657396 |
C>G |
Pathogenic |
Missense variant, intron variant, coding sequence variant |
rs1555545033 |
C>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000122 |
Process |
Negative regulation of transcription by RNA polymerase II |
IBA |
21873635 |
GO:0000785 |
Component |
Chromatin |
ISA |
|
GO:0000976 |
Function |
Transcription regulatory region sequence-specific DNA binding |
IDA |
18052923 |
GO:0000978 |
Function |
RNA polymerase II cis-regulatory region sequence-specific DNA binding |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ISA |
|
GO:0001502 |
Process |
Cartilage condensation |
IEA |
|
GO:0001503 |
Process |
Ossification |
IEA |
|
GO:0002154 |
Process |
Thyroid hormone mediated signaling pathway |
IBA |
21873635 |
GO:0002155 |
Process |
Regulation of thyroid hormone mediated signaling pathway |
IEA |
|
GO:0003700 |
Function |
DNA-binding transcription factor activity |
IDA |
8710870, 9653119, 18052923 |
GO:0004879 |
Function |
Nuclear receptor activity |
IBA |
21873635 |
GO:0004879 |
Function |
Nuclear receptor activity |
IDA |
8710870, 15466465, 18052923 |
GO:0005515 |
Function |
Protein binding |
IPI |
9653119, 10866662, 21516116, 25416956, 32296183 |
GO:0005634 |
Component |
Nucleus |
IDA |
8710870, 19158403 |
GO:0005654 |
Component |
Nucleoplasm |
TAS |
|
GO:0005829 |
Component |
Cytosol |
IDA |
19158403 |
GO:0006357 |
Process |
Regulation of transcription by RNA polymerase II |
IDA |
18052923 |
GO:0006366 |
Process |
Transcription by RNA polymerase II |
IDA |
8710870, 9653119 |
GO:0006367 |
Process |
Transcription initiation from RNA polymerase II promoter |
TAS |
|
GO:0007611 |
Process |
Learning or memory |
IEA |
|
GO:0008016 |
Process |
Regulation of heart contraction |
IEA |
|
GO:0008050 |
Process |
Female courtship behavior |
IEA |
|
GO:0008134 |
Function |
Transcription factor binding |
IPI |
8524305 |
GO:0008270 |
Function |
Zinc ion binding |
IEA |
|
GO:0009409 |
Process |
Response to cold |
IEA |
|
GO:0009755 |
Process |
Hormone-mediated signaling pathway |
IBA |
21873635 |
GO:0009755 |
Process |
Hormone-mediated signaling pathway |
IDA |
18052923 |
GO:0017025 |
Function |
TBP-class protein binding |
IDA |
8524305 |
GO:0017055 |
Process |
Negative regulation of RNA polymerase II transcription preinitiation complex assembly |
IDA |
8524305 |
GO:0019904 |
Function |
Protein domain specific binding |
IPI |
9653119 |
GO:0030154 |
Process |
Cell differentiation |
IBA |
21873635 |
GO:0030218 |
Process |
Erythrocyte differentiation |
IEA |
|
GO:0030878 |
Process |
Thyroid gland development |
IEA |
|
GO:0031490 |
Function |
Chromatin DNA binding |
IEA |
|
GO:0033032 |
Process |
Regulation of myeloid cell apoptotic process |
IEA |
|
GO:0044877 |
Function |
Protein-containing complex binding |
IEA |
|
GO:0045892 |
Process |
Negative regulation of transcription, DNA-templated |
IDA |
8710870 |
GO:0045925 |
Process |
Positive regulation of female receptivity |
IEA |
|
GO:0045944 |
Process |
Positive regulation of transcription by RNA polymerase II |
IBA |
21873635 |
GO:0050994 |
Process |
Regulation of lipid catabolic process |
IEA |
|
GO:0060509 |
Process |
Type I pneumocyte differentiation |
IEA |
|
GO:0070324 |
Function |
Thyroid hormone binding |
IDA |
8710870, 15466465 |
GO:0070324 |
Function |
Thyroid hormone binding |
IPI |
2879243 |
GO:0120162 |
Process |
Positive regulation of cold-induced thermogenesis |
ISS |
21652727 |
GO:2000143 |
Process |
Negative regulation of DNA-templated transcription, initiation |
IDA |
8524305 |
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P10827 |
Protein name |
Thyroid hormone receptor alpha (Nuclear receptor subfamily 1 group A member 1) (V-erbA-related protein 7) (EAR-7) (c-erbA-1) (c-erbA-alpha) |
Protein function |
[Isoform Alpha-1]: Nuclear hormone receptor that can act as a repressor or activator of transcription. High affinity receptor for thyroid hormones, including triiodothyronine and thyroxine. {ECO:0000269|PubMed:12699376, ECO:0000269|PubMed:146731 |
PDB |
1NAV
,
2H77
,
2H79
,
3HZF
,
3ILZ
,
3JZB
,
4LNW
,
4LNX
,
7QDT
,
8RQO
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00105 |
zf-C4 |
51 → 122 |
Zinc finger, C4 type (two domains) |
Domain |
PF00104 |
Hormone_recep |
205 → 379 |
Ligand-binding domain of nuclear hormone receptor |
Domain |
|
Sequence |
|
Sequence length |
490 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anemia |
Anemia, Anemia, Macrocytic |
rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505 |
27144938 |
Chronic obstructive pulmonary disease |
Chronic Obstructive Airway Disease |
rs2227956, rs1008438, rs1043618, rs562047, rs1061581, rs2763979, rs6457452, rs13147758, rs1828591, rs13118928 |
30804561 |
Congenital hypothyroidism |
Congenital Hypothyroidism |
rs121909180, rs121912646, rs121912648, rs1587178555, rs530719719, rs189261858, rs567500345, rs560702757, rs374620255, rs774517670 |
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Hypothyroidism |
Hypothyroidism |
rs869320723, rs121908862, rs121908863, rs121908865, rs121908866, rs121908867, rs121908870, rs121908871, rs121908872, rs2140110277, rs121908881, rs121908884, rs121908885, rs786205080, rs1586182912, rs121917847, rs104893655, rs104893657, rs104893658, rs104893659, rs104893660, rs104893656, rs121917719, rs786204790, rs189261858, rs879255608, rs868197660, rs879255609, rs1586744173, rs1586182837, rs771222349, rs1587618417, rs1601844140, rs760832986, rs780982673, rs1603336347, rs1691155605 |
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Macrocephaly |
Macrocephaly, Relative macrocephaly |
rs786204854, rs764333096, rs1557739557 |
27144938 |
Multiple congenital anomalies |
Multiple congenital anomalies |
rs1057517732 |
22494134, 26037512, 25670821, 23633213, 22604720, 27144938, 22168587, 24969835, 23940126 |
Osteochondrodysplasia |
Osteochondrodysplasias |
rs386833498, rs104893919, rs104893916, rs386833492, rs121908078, rs386833497, rs386833507, rs200963884, rs121908077, rs786204675, rs763198695, rs1554095433, rs766836061 |
27144938 |
Skeletal dysplasia |
Skeletal dysplasia |
rs121912632, rs121912633, rs121912634, rs121912636, rs121912637, rs267607147, rs387906324, rs267607150, rs397514473, rs398123438, rs515726153, rs515726154, rs515726162, rs515726163, rs515726172, rs757011098 |
27144938 |
Thyroid hormone resistance |
Generalized Thyroid Hormone Resistance |
rs121918686, rs121918688, rs121918687, rs387906515, rs121918690, rs28999971, rs121918691, rs28933408, rs121918692, rs121918693, rs121918694, rs121918695, rs121918696, rs121918697, rs121918698, rs121918703, rs121918704, rs121918705, rs121918706, rs121918707, rs121918708, rs1057519028, rs1060499695, rs1553610984, rs1553609185, rs1553609090, rs1553609119, rs1553609152, rs1553609179, rs1553610974, rs1553611038, rs1553611075, rs1553611083, rs750905761, rs1553609167, rs1553609210 |
27144938 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Developmental dysplasia of the hip |
Congenital Dysplasia Of The Hip |
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Congenital exomphalos |
Congenital exomphalos |
|
|
Congenital omphalocele |
Congenital omphalocele |
|
|
Dysmorphic features |
Dysmorphic features |
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22168587, 26037512, 23940126, 24969835, 23633213, 22604720, 25670821, 27144938, 22494134 |
Dyssomnia |
Dyssomnias |
|
|
Endometrioma |
Endometrioma |
|
22138541 |
Endometriosis |
Endometriosis |
rs1800629, rs1143634 |
22138541 |
Congenital hypothyroidism, nongoitrous |
HYPOTHYROIDISM, CONGENITAL, NONGOITROUS, 6 |
|
22168587, 24969835, 22494134, 25670821, 27144938, 26037512 |
Macroglossia |
Macroglossia |
|
|
Resistance to thyroid hormone |
Resistance to thyroid hormone due to a mutation in thyroid hormone receptor alpha |
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Sleep disorders |
Sleep Disorders |
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