Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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6913 |
Gene nameGene Name - the full gene name approved by the HGNC.
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T-box transcription factor 15 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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TBX15 |
SynonymsGene synonyms aliases
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TBX14 |
ChromosomeChromosome number
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1 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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1p12 |
SummarySummary of gene provided in NCBI Entrez Gene.
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This gene belongs to the T-box family of genes, which encode a phylogenetically conserved family of transcription factors that regulate a variety of developmental processes. All these genes contain a common T-box DNA-binding domain. Mutations in this gene |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs200564235 |
T>C |
Conflicting-interpretations-of-pathogenicity |
Coding sequence variant, synonymous variant |
rs1571155763 |
G>- |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000122 |
Process |
Negative regulation of transcription by RNA polymerase II |
IEA |
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GO:0000785 |
Component |
Chromatin |
ISA |
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GO:0000978 |
Function |
RNA polymerase II cis-regulatory region sequence-specific DNA binding |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
IBA |
21873635 |
GO:0000981 |
Function |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ISA |
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GO:0001227 |
Function |
DNA-binding transcription repressor activity, RNA polymerase II-specific |
IEA |
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GO:0001708 |
Process |
Cell fate specification |
IBA |
21873635 |
GO:0005515 |
Function |
Protein binding |
IPI |
25416956, 31515488, 32296183 |
GO:0006357 |
Process |
Regulation of transcription by RNA polymerase II |
IBA |
21873635 |
GO:0042803 |
Function |
Protein homodimerization activity |
IEA |
|
GO:0048701 |
Process |
Embryonic cranial skeleton morphogenesis |
IEA |
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GO:0090571 |
Component |
RNA polymerase II transcription repressor complex |
IEA |
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GO:1990837 |
Function |
Sequence-specific double-stranded DNA binding |
IDA |
28473536 |
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
Q96SF7 |
Protein name |
T-box transcription factor TBX15 (T-box protein 15) (T-box transcription factor TBX14) (T-box protein 14) |
Protein function |
Probable transcriptional regulator involved in the development of the skeleton of the limb, vertebral column and head. Acts by controlling the number of mesenchymal precursor cells and chondrocytes (By similarity). |
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00907 |
T-box |
115 → 304 |
T-box |
Domain |
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Sequence |
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Sequence length |
602 |
Interactions |
View interactions |
Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Brachydactyly |
Brachydactyly |
rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142 |
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Hydrocephalus |
Hydrocephalus |
rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546 |
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Macrocephaly |
Macrocephaly |
rs786204854, rs764333096, rs1557739557 |
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Microphthalmos |
Microphthalmos |
rs794726862, rs1329285216 |
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Pelviscapular dysplasia |
Pelviscapular dysplasia |
rs2101422204, rs2101422164 |
24039145, 19068278 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Alopecia |
Alopecia |
|
28196072 |
Alopecia, male pattern |
Alopecia, Male Pattern |
|
29146897 |
Ambiguous genitalia |
Ambiguous genitalia, female |
rs782562963 |
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Androgenetic alopecia |
Androgenetic Alopecia, Alopecia, Androgenetic, 3, Alopecia, Androgenetic, 2, Alopecia, Androgenetic, 1 |
|
29146897 |
Blepharophimosis |
Blepharophimosis |
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Camptodactyly of fingers |
Clinodactyly of the 5th finger |
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Congenital camptodactyly |
Congenital Camptodactyly |
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Congenital clubfoot |
Congenital clubfoot |
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Dislocated radial head |
Congenital dislocation of radial head |
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Developmental dysplasia of the hip |
Congenital Dysplasia Of The Hip |
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Short femur |
Congenital hypoplasia of femur |
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Dwarfism |
Dwarfism |
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Elbow flexion contracture |
Flexion contracture - elbow |
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Flexion contracture of wrist |
Flexion contracture - wrist |
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Frontal bossing |
Frontal bossing |
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Hydranencephaly |
Hydranencephaly |
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Hydronephrosis |
Hydronephrosis |
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Mesomelia |
Mesomelia |
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Microcornea |
Microcornea |
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Microglossia |
Microglossia |
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Micrognathism |
Micrognathism |
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Ramer ladda syndrome |
Ramer Ladda syndrome |
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Rhizomelia |
Rhizomelia |
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Stenosis of external auditory canal |
Stenosis of external auditory canal |
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Strabismus |
Strabismus |
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Syndactyly of the toes |
Syndactyly of the toes, 2-3 toe syndactyly |
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