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VAMP7 (vesicle associated membrane protein 7)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6845
Gene nameGene Name - the full gene name approved by the HGNC.
Vesicle associated membrane protein 7
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
VAMP7
SynonymsGene synonyms aliases
SYBL1, TI-VAMP, TIVAMP, VAMP-7
ChromosomeChromosome number
X|Y
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq28 and Yq12
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a transmembrane protein that is a member of the soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) family. The encoded protein localizes to late endosomes and lysosomes and is involved in the fusion of transpor
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT024077 hsa-miR-1-3p Proteomics 18668040
MIRT030255 hsa-miR-26b-5p Microarray 19088304
MIRT048872 hsa-miR-93-5p CLASH 23622248
MIRT1481882 hsa-miR-1248 CLIP-seq
MIRT1481883 hsa-miR-1271 CLIP-seq
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000149 Function SNARE binding IBA 21873635
GO:0005484 Function SNAP receptor activity IBA 21873635
GO:0005515 Function Protein binding IPI 16354670, 18775314, 26359495
GO:0005737 Component Cytoplasm IDA 18253931
GO:0005765 Component Lysosomal membrane HDA 17897319
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P51809
Protein name Vesicle-associated membrane protein 7 (VAMP-7) (Synaptobrevin-like protein 1) (Tetanus-insensitive VAMP) (Ti-VAMP)
Protein function Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal
PDB 2DMW
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13774 Longin
29 108
Regulated-SNARE-like domain
Domain
PF00957 Synaptobrevin
122 210
Synaptobrevin
Family
Sequence
Sequence length 220
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  SNARE interactions in vesicular transport   trans-Golgi Network Vesicle Budding
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Interleukin-12 signaling
Associated diseases
Causal
Disease name Disease term dbSNP ID References
46, xy partial gonadal dysgenesis 46,XY partial gonadal dysgenesis rs193922688 24880616
Azoospermia Azoospermia rs200969445, rs144567652, rs765353898
Carcinoma of the head and neck Squamous cell carcinoma of the head and neck rs121909237, rs121909250, rs121909251, rs121909252, rs28934571, rs28934574, rs28934576, rs28934578, rs121912664, rs397516436, rs121912666, rs397514495, rs587782705, rs193920774, rs730882001, rs786201838, rs587782144, rs866775781, rs730882008, rs1567549584, rs1597371666, rs1597365075 23358896
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Unknown
Disease name Disease term dbSNP ID References
Ambiguous genitalia Ambiguous Genitalia rs782562963
Gonadal dysgenesis Gonadal Dysgenesis
Gynecomastia Gynecomastia
Hypertrophy of clitoris Hypertrophy of clitoris

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