SPTB (spectrin beta, erythrocytic)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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6710 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Spectrin beta, erythrocytic |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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SPTB |
SynonymsGene synonyms aliases
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EL3, HS2, HSPTB1, SPH2 |
ChromosomeChromosome number
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14 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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14q23.3 |
SummarySummary of gene provided in NCBI Entrez Gene.
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This locus encodes a member of the spectrin gene family. Spectrin proteins, along with ankyrin, play a role in cell membrane organization and stability. The protein encoded by this locus functions in stability of erythrocyte membranes, and mutations in th |
SNPsSNP information provided by dbSNP.
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SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs17180350 |
C>A,T |
Likely-benign, conflicting-interpretations-of-pathogenicity |
Coding sequence variant, missense variant |
rs121918645 |
C>G |
Pathogenic |
Missense variant, coding sequence variant, genic downstream transcript variant |
rs121918646 |
A>G |
Pathogenic |
Missense variant, coding sequence variant |
rs121918647 |
G>C |
Pathogenic |
Missense variant, coding sequence variant, genic downstream transcript variant |
rs121918648 |
A>G |
Pathogenic, likely-pathogenic |
Missense variant, coding sequence variant, genic downstream transcript variant |
rs121918649 |
A>C |
Pathogenic, uncertain-significance |
Missense variant, coding sequence variant, genic downstream transcript variant |
rs121918650 |
C>G,T |
Pathogenic |
Missense variant, coding sequence variant, genic downstream transcript variant |
rs121918651 |
T>C |
Pathogenic |
Missense variant, initiator codon variant |
rs150471537 |
G>A,T |
Likely-pathogenic |
Coding sequence variant, stop gained, synonymous variant |
rs200386310 |
C>A,T |
Likely-pathogenic |
Coding sequence variant, stop gained, missense variant, genic downstream transcript variant |
rs267607086 |
G>A |
Pathogenic |
Coding sequence variant, stop gained, genic downstream transcript variant |
rs786204766 |
C>T |
Likely-pathogenic |
Splice donor variant |
rs863223302 |
C>A |
Pathogenic |
Intron variant, genic downstream transcript variant |
rs863223303 |
->TC |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, frameshift variant |
rs863223304 |
G>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1555366592 |
->AA |
Likely-pathogenic |
Coding sequence variant, genic downstream transcript variant, frameshift variant |
rs1555366607 |
A>G |
Pathogenic |
Coding sequence variant, genic downstream transcript variant, missense variant |
rs1555367318 |
ACCTGGGCCTC>- |
Pathogenic |
Splice donor variant, coding sequence variant, genic downstream transcript variant, intron variant |
rs1555367359 |
G>A |
Pathogenic |
Stop gained, coding sequence variant, genic downstream transcript variant |
rs1555367789 |
C>T |
Likely-pathogenic |
Genic downstream transcript variant, intron variant |
rs1555370967 |
CACGAGGC>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1555371769 |
C>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1566754467 |
C>A |
Pathogenic |
Stop gained, coding sequence variant |
rs1594753904 |
G>- |
Pathogenic |
Genic downstream transcript variant, frameshift variant, coding sequence variant |
rs1594767593 |
G>A |
Pathogenic |
Stop gained, coding sequence variant |
rs1594770057 |
T>- |
Pathogenic |
Frameshift variant, coding sequence variant |
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miRNAmiRNA information provided by mirtarbase database.
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
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UniProt ID |
P11277 |
Protein name |
Spectrin beta chain, erythrocytic (Beta-I spectrin) |
Protein function |
Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. |
PDB |
1S35
,
3EDU
,
3F57
,
3KBT
,
3KBU
,
3LBX
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Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00307 |
CH |
54 → 159 |
Calponin homology (CH) domain |
Domain |
PF00307 |
CH |
173 → 279 |
Calponin homology (CH) domain |
Domain |
PF00435 |
Spectrin |
302 → 412 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
422 → 526 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
528 → 635 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
637 → 741 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
743 → 846 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
848 → 952 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
954 → 1059 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1061 → 1166 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1168 → 1272 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1274 → 1377 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1385 → 1482 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1478 → 1582 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1584 → 1688 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1690 → 1795 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1797 → 1901 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
1903 → 2007 |
Spectrin repeat |
Domain |
PF00435 |
Spectrin |
2009 → 2095 |
Spectrin repeat |
Domain |
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Sequence |
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Sequence length |
2137 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anemia |
Anemia, Hemolytic, Anemia, Hemolytic, Acquired, Anemia, Hemolytic, Congenital, Anemia, Microangiopathic, Anemia, Neonatal, Anemia, hereditary spherocytic hemolytic, stomatocytic anemia |
rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505 |
9005995, 23664421 |
Cholelithiasis |
Cholelithiasis |
rs121918440, rs72552778, rs387906528, rs759202962, rs377160065, rs1051861187, rs757693457, rs752563752 |
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Elliptocytosis |
Elliptocytosis, Hereditary, ELLIPTOCYTOSIS 3 |
rs121918645, rs863223302, rs863223303, rs1594753904, rs121918647, rs121918648, rs121918650, rs121918634, rs757679761, rs121918637, rs121918638, rs121918640, rs121918641, rs121918642, rs863223305, rs121434564 |
1975598, 8226774, 23664421, 27906107, 8226774, 7883966, 1975598, 8018926 |
Hereditary elliptocytosis |
Hereditary elliptocytosis |
rs869025285 |
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Hereditary pyropoikilocytosis |
Hereditary pyropoikilocytosis |
rs121918647, rs757679761, rs121918637, rs121918642, rs121918641, rs757147440, rs1557961718, rs1394141324, rs752114200, rs1035389616, rs1571530070 |
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Hereditary spherocytosis |
Hereditary spherocytosis |
rs137852829, rs137852830, rs137852831, rs397514029, rs786205243, rs121918646, rs121918648, rs121918651, rs863223304, rs267607086, rs754614154, rs266257354, rs121917734, rs266257355, rs115998465, rs387906566, rs121912741, rs121912742, rs56361140, rs121912750, rs28931584, rs28931585, rs121912755, rs143682977, rs786204766, rs200386310, rs1553234309, rs1555366607, rs1555366592, rs1553232007, rs1554522035, rs777701149, rs1554567249, rs1554578304, rs1554627073, rs1555367359, rs1555367789, rs150471537, rs1555369657, rs1555370967, rs866727908, rs1555596072, rs1555596165, rs1555596757, rs1586144223, rs1563502820, rs1566754467, rs377659326, rs1594773586, rs1586072383, rs750820522, rs1586145051, rs1594767593, rs1586114714, rs1345709572 |
23664421, 8102379, 19538529 |
Hydrops fetalis |
Hydrops Fetalis |
rs28935477, rs1131691986 |
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Hyperbilirubinemia |
Hyperbilirubinemia, Hyperbilirubinemia, Neonatal |
rs34993780, rs587784535, rs797046090, rs797046091 |
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Hypofibrinogenemia |
Hypofibrinogenemia |
rs121913087, rs121913088, rs587776837, rs121909616, rs121909625, rs121909608, rs121909607, rs146387238, rs1578795296, rs1214070111, rs776817952, rs762964798, rs121909606, rs1414035000, rs1310452604 |
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Restrictive cardiomyopathy |
Restrictive cardiomyopathy |
rs104894729, rs397516153, rs727503513, rs727503499, rs727503504, rs730880231, rs1554401403, rs1563005534, rs1420394583 |
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Spherocytosis |
SPHEROCYTOSIS, HEREDITARY, 2 |
rs786205242, rs786205243, rs786205244, rs121918634 |
11703334, 8844207, 8102379, 19538529, 8226774, 9714702, 7883966, 27906107 |
Thrombophilia |
Thrombophilia |
rs118203912, rs118203911, rs121918141, rs121918142, rs121918143, rs121918144, rs121918145, rs121918146, rs121918147, rs121918148, rs121918149, rs121918151, rs121918152, rs121918153, rs121918154, rs1558715857, rs121918155, rs121918157, rs121918158, rs2104934553, rs121918159, rs121918160, rs121918477, rs121918473, rs121918474, rs267606981, rs2107137679, rs121918475, rs387906674, rs387907201, rs369504169, rs142742242, rs373983977, rs368074804, rs574132670, rs757583846, rs863224838, rs121918476, rs1333329860, rs1553424043, rs1553808038, rs5017717, rs374476971, rs1553809314, rs1553423955, rs767112991, rs1558718572, rs571278160, rs766261022, rs1321566264, rs1559926604, rs1241365457, rs759677822, rs1448630830, rs1305782685, rs1571577365, rs1247269491, rs777486993, rs201907715, rs769277939, rs199469503, rs1575904540, rs199469494, rs199469471, rs1189377845, rs1576182848, rs1688218776, rs1456533664, rs1709033502, rs1708668246, rs1708665916 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Fibrinogen deficiency |
Fibrinogen Deficiency |
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Frontal bossing |
Frontal bossing |
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Gout |
Gout |
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Microangiopathic hemolytic anemia |
Microangiopathic hemolytic anemia |
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9005995 |
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