SMN1 (survival of motor neuron 1, telomeric)
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Gene
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Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
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6606 |
Gene nameGene Name - the full gene name approved by the HGNC.
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Survival of motor neuron 1, telomeric |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
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SMN1 |
SynonymsGene synonyms aliases
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BCD541, GEMIN1, SMA, SMA1, SMA2, SMA3, SMA4, SMA@, SMN, SMNT, T-BCD541, TDRD16A |
ChromosomeChromosome number
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5 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
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5q13.2 |
SummarySummary of gene provided in NCBI Entrez Gene.
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This gene is part of a 500 kb inverted duplication on chromosome 5q13. This duplicated region contains at least four genes and repetitive elements which make it prone to rearrangements and deletions. The repetitiveness and complexity of the sequence have |
miRNAmiRNA information provided by mirtarbase database.
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Transcription factors
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Transcription factor |
Regulation |
Reference |
JUN |
Repression |
15550677 |
SRF |
Activation |
15550677 |
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
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GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000245 |
Process |
Spliceosomal complex assembly |
IMP |
9845364 |
GO:0000245 |
Process |
Spliceosomal complex assembly |
NAS |
9323129 |
GO:0000387 |
Process |
Spliceosomal snRNP assembly |
IBA |
21873635 |
GO:0000387 |
Process |
Spliceosomal snRNP assembly |
IDA |
18984161 |
GO:0000387 |
Process |
Spliceosomal snRNP assembly |
TAS |
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GO:0003723 |
Function |
RNA binding |
IEA |
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GO:0005515 |
Function |
Protein binding |
IPI |
11135666, 11283611, 11714716, 12065586, 12975319, 14715275, 16087681, 17023415, 18093976, 18984161, 19515850, 19928837, 20696395, 21070772, 21072240, 21496457, 21516116, 21816274, 21900206, 22365833, 23752268, 24981860, 25416956, 25737013, 26700805, 26828962, 26871637, 30177828, 322 |
GO:0005634 |
Component |
Nucleus |
IBA |
21873635 |
GO:0005634 |
Component |
Nucleus |
IDA |
11283611 |
GO:0005654 |
Component |
Nucleoplasm |
IDA |
17068332 |
GO:0005654 |
Component |
Nucleoplasm |
TAS |
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GO:0005737 |
Component |
Cytoplasm |
IDA |
9845364, 11283611, 17068332 |
GO:0005829 |
Component |
Cytosol |
IDA |
18984161 |
GO:0005829 |
Component |
Cytosol |
TAS |
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GO:0006353 |
Process |
DNA-templated transcription, termination |
IMP |
26700805 |
GO:0007399 |
Process |
Nervous system development |
IEA |
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GO:0015030 |
Component |
Cajal body |
IBA |
21873635 |
GO:0015030 |
Component |
Cajal body |
IDA |
11283611, 17068332 |
GO:0016604 |
Component |
Nuclear body |
IDA |
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GO:0030018 |
Component |
Z disc |
IEA |
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GO:0030424 |
Component |
Axon |
IEA |
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GO:0032797 |
Component |
SMN complex |
IBA |
21873635 |
GO:0032797 |
Component |
SMN complex |
IDA |
11283611, 18093976, 18984161 |
GO:0034719 |
Component |
SMN-Sm protein complex |
IDA |
18984161 |
GO:0036464 |
Component |
Cytoplasmic ribonucleoprotein granule |
IDA |
18093976 |
GO:0042802 |
Function |
Identical protein binding |
IPI |
8670859, 14715275, 16189514, 19928837, 21516116, 22365833, 23022347, 25416956, 29997244, 32296183, 32814053 |
GO:0043005 |
Component |
Neuron projection |
IDA |
18093976 |
GO:0043204 |
Component |
Perikaryon |
IDA |
18093976 |
GO:0051170 |
Process |
Import into nucleus |
TAS |
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GO:0097504 |
Component |
Gemini of coiled bodies |
IBA |
21873635 |
GO:0097504 |
Component |
Gemini of coiled bodies |
IDA |
8670859, 9845364, 11283611, 17068332, 20513430 |
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Arthrogryposis multiplex congenita |
Arthrogryposis |
rs1586285494, rs80358233, rs137853305, rs1559154278, rs398124167, rs398124172, rs587780399, rs786204576, rs786204430, rs769345284, rs749355583, rs793888524, rs793888525, rs878854368, rs555445835, rs758105619, rs886041851, rs794727136, rs755239192, rs760715690, rs773952935, rs112610938, rs1057516676, rs1057516996, rs780022652, rs1057517399, rs1057517360, rs1057518353, rs1057517977, rs1064796311, rs779232987, rs775997446, rs1064797093, rs1064797094, rs1064797095, rs755500591, rs754272530, rs758247804, rs200731870, rs747179265, rs1553740233, rs776569219, rs375628303, rs775631800, rs781667543, rs1553548666, rs928945364, rs763364977, rs1458048713, rs1553883480, rs1472403020, rs1336053002, rs202048855, rs1197561990, rs755531536, rs1554112524, rs762133567, rs1553555882, rs934111355, rs1255744452, rs1366269616, rs1555734932, rs1553548207, rs752582527, rs1257495033, rs113525641, rs755863625, rs374929094, rs539819851, rs1366853918, rs1218073575, rs1553537512, rs1553552384, rs747564597, rs776059611, rs756726488, rs1357811155, rs1553939600, rs772009599, rs1255445731, rs1011425121, rs1553561697, rs1553551748, rs1553552413, rs760935667, rs1553603400, rs1302373559, rs1389892619, rs1553710982, rs757157808, rs1180339426, rs761964375, rs1235589246, rs1443738549, rs1553934586, rs1553934597, rs1553603437, rs749452641, rs1553904694, rs754369875, rs112517981, rs774495973, rs1428597732, rs746999970, rs113091511, rs1553603958, rs1553469502, rs770797137, rs1553608621, rs1159756073, rs776167256, rs778593702, rs1553601066, rs1553689774, rs760768475, rs1559296376, rs201636991, rs1559039815, rs748922882, rs772366030, rs1207534366, rs1259297878, rs762780413, rs1559360386, rs1559940778, rs760200697, rs1344099907, rs750900690, rs1559168230, rs746177326, rs761067911, rs1323364980, rs537560378, rs1319778592, rs1340063197, rs1577833924, rs750585238, rs1600470099, rs1575714905, rs1576203853, rs779909544, rs760124743, rs2096362304, rs1212374733, rs1490309743, rs767709270, rs1374971806, rs2096491549, rs2097886912, rs2099021112, rs2097758221, rs1474341248, rs925947627 |
8787675 |
Atrial septal defect |
Atrial Septal Defects |
rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074, rs267606903, rs121912677, rs387906585, rs387906773, rs72554028, rs587782928, rs587782929, rs587782930, rs587784067, rs1555226315, rs879253754, rs1114167356, rs773922431, rs1554093487, rs1554093433, rs1554093461, rs1561621507, rs1561619801, rs766692577, rs1581108237, rs1581111034, rs1579663872, rs1583066622, rs1456289029, rs1761430125 |
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Distal hereditary motor neuronopathy |
Hereditary Motor Neuronopathy |
rs104894345, rs104894351, rs137852970, rs137852972, rs267607143, rs267607145, rs28939680, rs29001571, rs28937568, rs28937569, rs104894020, rs121909112, rs121909113, rs121909342, rs786205090, rs137852644, rs137852646, rs121913595, rs387906904, rs387907242, rs398123028, rs398122838, rs730880031, rs730882139, rs730882140, rs267607623, rs797044802, rs746581714, rs756614404, rs770272088, rs876661124, rs879253868, rs879254085, rs764813110, rs1060502838, rs1064796370, rs1554338260, rs137852973, rs1347223331, rs377626365, rs772217003, rs1553174566, rs1324667543, rs557327165, rs1441260635, rs1565929080, rs770593694, rs1584026191, rs372181708, rs758322672, rs1587668798, rs1587671674, rs972425138, rs1594427564, rs1594445698, rs1594453111, rs1337346956, rs1240319744, rs199839840, rs754422011, rs1595599240, rs1595600898, rs1555408333, rs774079947, rs1584034430, rs562669797, rs749383814, rs762573767, rs767263669, rs746212067, rs1182614290, rs1018405924 |
19150990, 21819082, 15862279, 27111068, 21350916 |
Distal spinal muscular atrophy |
Distal Spinal Muscular Atrophy |
rs29001584, rs28941475, rs121434378, rs267607146, rs137852665, rs137852666, rs137852667, rs137852668, rs786205089, rs137852669, rs786205090, rs137852670, rs137852646, rs372000714, rs724159994, rs730882139, rs730882140, rs796065352, rs886037759, rs746581714, rs780594709, rs756614404, rs864309503, rs200089714, rs145226920, rs35193202, rs879253865, rs201060167, rs879253887, rs368775789, rs886043773, rs1057518588, rs1060502838, rs768823392, rs1131691657, rs1554338260, rs1555243325, rs991227431, rs557416644, rs1160978570, rs1000091588, rs770111639, rs1566443170, rs759641927, rs372181708, rs1564096221, rs1332319177, rs1479493690, rs972425138, rs779716706, rs776730737, rs1303837541, rs1337346956, rs750994603, rs199839840, rs1366461184, rs1454639285, rs1594427410, rs145670786 |
21819082, 15862279, 19150990, 21350916, 27111068 |
Spinal muscular atrophy |
Juvenile Spinal Muscular Atrophy, Spinal Muscular Atrophy, Muscular Atrophy, Spinal, Type II, Spinal Muscular Atrophies of Childhood, SPINAL MUSCULAR ATROPHY, TYPE IV, Muscular atrophy, spinal, infantile chronic form, Spinal muscular atrophy 4 |
rs104893922, rs1554066397, rs77804083, rs104893930, rs104893927, rs104893935, rs387906738, rs398123028, rs371707778, rs398123030, rs587780564, rs713993043, rs727505393, rs797044855, rs863223361, rs797045412, rs869320621, rs879254085, rs1057518083, rs1064795760, rs1131691347, rs1554082383, rs1554338262, rs1561503058, rs1564061982, rs141760116, rs1217001154, rs1561498701, rs77668214, rs1587671674, rs972425138, rs1595599240, rs1587668077, rs1587668748, rs1587668769, rs1263279945, rs1889019962 |
7813012, 10732817, 9837824, 9158159, 8787675, 14715275, 17924536, 11826188, 21350916, 15862279, 20442745, 27111068, 10679938, 19150990, 11839954, 18155522, 19050931, 21819082, 26606804, 18572081, 11826188, 9837824, 9158159, 8787675, 17924536, 10732802, 14715275, 24498607, 7813012, 21088113, 17924536, 21542063, 11826188, 7813012, 8787675 |
Proximal spinal muscular atrophy |
Proximal spinal muscular atrophy type 1, Proximal spinal muscular atrophy type 3, Proximal spinal muscular atrophy type 4, Proximal spinal muscular atrophy type 2 |
rs121918358 |
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Scapuloperoneal spinal muscular atrophy |
Scapuloperoneal Form of Spinal Muscular Atrophy |
rs267607143, rs267607145, rs267607146 |
21819082, 15862279, 27111068, 19150990, 21350916 |
Ventricular septal defect |
Ventricular Septal Defects |
rs104894073, rs387906775 |
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Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Amyotrophy |
Proximal amyotrophy |
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Bulbospinal neuronopathy |
Bulbospinal Neuronopathy |
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15862279, 21350916, 21819082, 19150990, 27111068 |
Hereditary motor neuropathy |
HMN (Hereditary Motor Neuropathy) Proximal Type I |
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7813012, 15580564, 15249625, 9147655, 17924536, 8922999, 21389246, 21088113, 10732817, 14715275, 8787675, 11826188 |
Myelopathic muscular atrophy |
Myelopathic Muscular Atrophy |
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21819082, 27111068, 19150990, 21350916, 15862279 |
Oculopharyngeal spinal muscular atrophy |
Oculopharyngeal Spinal Muscular Atrophy |
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19150990, 15862279, 21819082, 27111068, 21350916 |
Progressive muscular atrophy |
Progressive Muscular Atrophy |
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15862279, 21350916, 27111068, 21819082, 19150990 |
Progressive proximal myelopathic muscular atrophy |
Progressive Proximal Myelopathic Muscular Atrophy |
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21819082, 15862279, 19150990, 21350916, 27111068 |
Respiratory failure |
Respiratory Failure |
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17761649 |
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