SLC12A3 (solute carrier family 12 member 3)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
6559 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Solute carrier family 12 member 3 |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
SLC12A3 |
SynonymsGene synonyms aliases
|
NCC, NCCT, TSC |
ChromosomeChromosome number
|
16 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
16q13 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
This gene encodes a renal thiazide-sensitive sodium-chloride cotransporter that is important for electrolyte homeostasis. This cotransporter mediates sodium and chloride reabsorption in the distal convoluted tubule. Mutations in this gene cause Gitelman s |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs13306668 |
G>A,C,T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs28936387 |
T>C |
Pathogenic |
Missense variant, coding sequence variant |
rs28936388 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs34803727 |
G>A |
Pathogenic, likely-pathogenic |
Missense variant, coding sequence variant |
rs121909379 |
T>C |
Likely-pathogenic, pathogenic |
Coding sequence variant, missense variant |
rs121909380 |
G>A,T |
Conflicting-interpretations-of-pathogenicity, pathogenic |
Coding sequence variant, missense variant |
rs121909382 |
C>A,T |
Pathogenic |
Coding sequence variant, missense variant |
rs121909383 |
C>T |
Likely-pathogenic, pathogenic |
Coding sequence variant, missense variant |
rs121909384 |
G>T |
Pathogenic |
Coding sequence variant, missense variant |
rs121909385 |
T>C |
Pathogenic |
Coding sequence variant, missense variant |
rs138977195 |
G>A |
Conflicting-interpretations-of-pathogenicity, pathogenic |
Coding sequence variant, missense variant |
rs139743444 |
C>A,T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs140012781 |
C>T |
Uncertain-significance, pathogenic |
Coding sequence variant, missense variant |
rs140551719 |
C>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs142679083 |
C>T |
Conflicting-interpretations-of-pathogenicity, uncertain-significance |
Coding sequence variant, missense variant |
rs145337602 |
C>T |
Likely-pathogenic, pathogenic |
Coding sequence variant, missense variant |
rs146158333 |
C>A,G,T |
Pathogenic |
Coding sequence variant, missense variant |
rs146632606 |
G>C |
Uncertain-significance, likely-pathogenic |
Coding sequence variant, missense variant |
rs147200024 |
G>A,C |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs147901432 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs148038173 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs185927948 |
T>A |
Conflicting-interpretations-of-pathogenicity, pathogenic |
Coding sequence variant, missense variant |
rs199849117 |
G>A |
Pathogenic |
Missense variant, coding sequence variant |
rs200697179 |
C>G,T |
Pathogenic |
Missense variant, coding sequence variant |
rs200817545 |
A>C,G,T |
Pathogenic |
Missense variant, coding sequence variant |
rs201255508 |
C>T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs201555148 |
G>A |
Pathogenic |
Splice acceptor variant |
rs201945662 |
G>A,C,T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs267607050 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs267607051 |
G>A,C |
Pathogenic |
Missense variant, coding sequence variant |
rs369360334 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs370175770 |
G>A |
Pathogenic |
Missense variant, coding sequence variant |
rs371443644 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs373899077 |
C>T |
Pathogenic |
Missense variant, coding sequence variant |
rs373901523 |
G>A,T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs374055486 |
C>A,T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs374163823 |
G>A |
Likely-pathogenic, pathogenic |
Missense variant, coding sequence variant |
rs374182921 |
C>G,T |
Pathogenic |
Intron variant |
rs374324018 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs377456965 |
A>C |
Likely-pathogenic |
Splice acceptor variant, intron variant |
rs568513106 |
T>C |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs747139582 |
C>A,T |
Likely-benign, pathogenic |
Synonymous variant, stop gained, coding sequence variant |
rs748547209 |
A>T |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs749098014 |
G>T |
Pathogenic |
Splice donor variant |
rs750710315 |
CA>- |
Likely-pathogenic |
Frameshift variant, coding sequence variant |
rs751409326 |
C>A |
Pathogenic |
Stop gained, coding sequence variant |
rs752101663 |
G>A |
Likely-pathogenic, pathogenic |
Missense variant, coding sequence variant |
rs753523115 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs754220610 |
G>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs754378340 |
C>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs755560627 |
G>T |
Pathogenic |
Splice acceptor variant |
rs758035631 |
G>A,C |
Pathogenic |
Missense variant, coding sequence variant |
rs759377924 |
G>A |
Pathogenic |
Missense variant, coding sequence variant |
rs759426055 |
G>A,C |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs759801838 |
GTACTG>- |
Likely-pathogenic |
Coding sequence variant, splice donor variant, intron variant |
rs764220175 |
T>C |
Likely-pathogenic |
Splice donor variant |
rs768527231 |
G>A |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs770513014 |
->TC |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
rs771701344 |
ACCAAGT>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs775931992 |
C>T |
Pathogenic |
Coding sequence variant, missense variant |
rs779160677 |
C>G,T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs780299444 |
->CC |
Pathogenic |
Coding sequence variant, frameshift variant |
rs886039753 |
C>T |
Pathogenic |
Stop gained, coding sequence variant |
rs886039754 |
A>G |
Pathogenic, likely-pathogenic |
Missense variant, coding sequence variant |
rs886041108 |
C>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1064793879 |
C>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1215667472 |
G>- |
Pathogenic |
Coding sequence variant, frameshift variant |
rs1274973729 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1347239469 |
G>C,T |
Pathogenic |
Splice donor variant |
rs1366655422 |
G>A |
Pathogenic |
Stop gained, coding sequence variant |
rs1441228030 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1555499123 |
C>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1555499151 |
T>C |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1555499234 |
C>- |
Pathogenic |
Frameshift variant, intron variant, coding sequence variant |
rs1555501437 |
A>G |
Likely-pathogenic |
Missense variant, coding sequence variant |
rs1555501632 |
G>- |
Pathogenic |
Frameshift variant, coding sequence variant |
rs1596883431 |
C>T |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1596890176 |
T>A,C |
Likely-pathogenic |
Coding sequence variant, missense variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P55017 |
Protein name |
Solute carrier family 12 member 3 (Na-Cl cotransporter) (NCC) (Na-Cl symporter) (Thiazide-sensitive sodium-chloride cotransporter) |
Protein function |
Electroneutral sodium and chloride ion cotransporter, which acts as a key mediator of sodium and chloride reabsorption in kidney distal convoluted tubules (PubMed:18270262, PubMed:21613606, PubMed:22009145, PubMed:36351028, PubMed:36792826). Als |
PDB |
7Y6I
,
7YG0
,
7YG1
,
8FHN
,
8FHO
,
8FHP
,
8FHQ
,
8FHR
,
8FHT
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF08403 |
AA_permease_N |
45 → 116 |
Amino acid permease N-terminal |
Family |
PF00324 |
AA_permease |
141 → 647 |
Amino acid permease |
Family |
PF03522 |
SLC12 |
655 → 810 |
Solute carrier family 12 |
Family |
PF03522 |
SLC12 |
795 → 1020 |
Solute carrier family 12 |
Family |
|
Sequence |
|
Sequence length |
1021 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
|
|
Associated diseases
|
Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Bartter syndrome |
Bartter Disease |
rs74315284, rs74315285, rs1389952796, rs74315286, rs74315287, rs74315288, rs74315289, rs121908144, rs121908145, rs121909137, rs121909138, rs121909131, rs121909132, rs121909133, rs121909134, rs121909135, rs779908241, rs121909136, rs104893706, rs137853158, rs137853159, rs774515747, rs1057519608, rs104894244, rs2135941091, rs104894245, rs104894253, rs104894254, rs104894250, rs104894251, rs397514729, rs863224858, rs765347751, rs878854404, rs878854405, rs878854406, rs878854407, rs875989852, rs886039870, rs779588655, rs201707868, rs1057516207, rs185212943, rs1057520300, rs1057520301, rs1057520302, rs1057520303, rs1057520304, rs370221310, rs779593707, rs377205432, rs1555466999, rs953686324, rs768286324, rs746509804, rs771232166, rs1566857461, rs373367600, rs1159737562, rs769554073, rs1570334344, rs201781905, rs377215024, rs755714542, rs1570340095, rs1570341086, rs1180658535, rs764247288, rs865973286, rs1007109925, rs1411280373, rs1380025163, rs758961147 |
|
Chondrocalcinosis |
Calcium pyrophosphate deposition disease |
rs121908405, rs28939080, rs121908407, rs2126640512, rs121908408, rs121908409, rs121908410 |
|
Diabetes mellitus |
Diabetes Mellitus, Insulin-Dependent, Diabetes Mellitus, Non-Insulin-Dependent |
rs587776515, rs61730328, rs606231121, rs606231122, rs79020217, rs77625743, rs78378398, rs606231123, rs4402960, rs1362648752, rs3745368, rs3792267, rs3842570, rs5030952, rs2975760, rs119489103, rs7903146, rs12255372, rs11196205, rs104893649, rs80356624, rs80356616, rs80356625, rs80356611, rs104894237, rs80356613, rs137852740, rs137852786, rs387906407, rs151344623, rs28938469, rs28936371, rs137852672, rs80356637, rs80356642, rs80356653, rs137852673, rs137852674, rs80356634, rs80356651, rs193929360, rs137853334, rs137853335, rs137853336, rs1600731198, rs137853338, rs121964882, rs121964883, rs387906511, rs121964884, rs121964885, rs2147483647, rs387906512, rs121964887, rs121964888, rs121964889, rs121964890, rs121964891, rs28934878, rs74315383, rs121964893, rs886037620, rs886037621, rs80356663, rs121434593, rs121913150, rs587776825, rs137853236, rs2135842335, rs137853237, rs137853238, rs2135818776, rs1566092470, rs1463923467, rs137853243, rs137853244, rs2135839114, rs137853245, rs2135847417, rs121918407, rs104894005, rs104894006, rs80356655, rs104894008, rs104894009, rs104894010, rs104894011, rs80356654, rs104894016, rs193929376, rs193929374, rs193929375, rs193929373, rs80356666, rs80356669, rs80356664, rs193929366, rs1048095, rs193929355, rs193929356, rs1259467443, rs104893642, rs387906777, rs387906779, rs141804752, rs182349376, rs184917682, rs193922396, rs193922400, rs193922401, rs137852676, rs193922407, rs193922638, rs193922257, rs193922258, rs193922259, rs193922260, rs193922261, rs193922262, rs193922263, rs193922264, rs193922265, rs193922268, rs193921338, rs193922269, rs193922272, rs193922273, rs193922275, rs193922278, rs193922279, rs193922280, rs193922281, rs193922282, rs193922283, rs193922284, rs193922286, rs193922287, rs193922289, rs193922291, rs193922295, rs193922297, rs193922300, rs193922302, rs193922303, rs193922308, rs193922313, rs193922314, rs144723656, rs193922315, rs193922316, rs193922317, rs148311934, rs193922319, rs193922320, rs193922326, rs193922329, rs193922330, rs193922331, rs193922335, rs193922336, rs193922338, rs193922340, rs193922341, rs193922471, rs193922475, rs193922476, rs193922479, rs193922355, rs193922356, rs193922576, rs193922578, rs193922582, rs193922588, rs193922592, rs193922594, rs193922596, rs386134267, rs193922598, rs193922599, rs193922600, rs193922604, rs193922605, rs397514580, rs397515519, rs267601516, rs587780343, rs587780345, rs587780346, rs587780347, rs587780357, rs148954387, rs61736969, rs587783673, rs587783672, rs587783669, rs786204676, rs794727236, rs151344624, rs794727775, rs794727839, rs199946797, rs869320673, rs796065047, rs759072800, rs797045595, rs797045209, rs797045207, rs797045213, rs797045623, rs863225280, rs149703259, rs864321656, rs139964066, rs777870079, rs878853246, rs769268803, rs886039380, rs886041392, rs886041391, rs886042610, rs143064649, rs1057516192, rs746480424, rs1057516281, rs576684889, rs754728827, rs1057520291, rs1057520779, rs893256143, rs1057520504, rs1057524790, rs1057524902, rs1057524904, rs1057524905, rs764232985, rs1064793998, rs1064794268, rs769086289, rs369429452, rs1085307913, rs1131691416, rs765432081, rs1131692182, rs748749585, rs1554335441, rs762263694, rs1312678560, rs767565869, rs1375656631, rs1554335391, rs1360415315, rs1554335616, rs1554335752, rs1554909277, rs769518471, rs757171524, rs768951263, rs762703502, rs1555212248, rs1555212359, rs1555813319, rs1555816654, rs1553638903, rs1553638909, rs948820149, rs371977235, rs1553784995, rs76474829, rs200998587, rs1415041911, rs1554334894, rs1260178539, rs1554335421, rs1555211904, rs779184183, rs1554335564, rs200670692, rs1400535021, rs1554334872, rs1555212749, rs1553876668, rs1553878211, rs954727530, rs1554924035, rs372307320, rs925231098, rs1554913069, rs1554933565, rs766431403, rs746714109, rs751279984, rs770664202, rs1008906426, rs758844607, rs1554924540, rs1566092307, rs753998395, rs1565885935, rs1167124132, rs1376796469, rs556436603, rs1562715657, rs1486280029, rs1564869850, rs755259997, rs769569410, rs1172328722, rs1286294151, rs1375557127, rs1568731279, rs1562715426, rs556581174, rs1564865302, rs1565886545, rs776793516, rs1568724014, rs1392795567, rs781260712, rs1562719705, rs1382448285, rs1564977373, rs750586210, rs1598842892, rs1583592247, rs780612692, rs1593060859, rs1476637197, rs751279776, rs1593060890, rs1191912908, rs1167675604, rs1583601110, rs1593058932, rs778611627, rs753296261 |
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Fanconi syndrome |
Adult Fanconi syndrome |
rs398124646 |
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Hypertension |
Hypertensive disease |
rs13306026, rs13333226 |
18480177 |
Hypomagnesemia |
Hypomagnesemia 2, renal |
rs118203979, rs118203980, rs118203981, rs104893720, rs104893721, rs104893722, rs104893723, rs104893724, rs104893725, rs104893727, rs104893728, rs104893729, rs104893730, rs104893731, rs104893732, rs121908543, rs121909379, rs28936387, rs28936388, rs755560627, rs121909380, rs1347239469, rs121909382, rs121909383, rs2144723103, rs121909384, rs121909385, rs267607050, rs121918067, rs387906880, rs371443644, rs786205909, rs786205910, rs794726858, rs138977195, rs568513106, rs185927948, rs886041108, rs201255508, rs374163823, rs147901432, rs199974259, rs13306668, rs200697179, rs200817545, rs140012781, rs202114767, rs749098014, rs373899077, rs1553809654, rs201555148, rs140551719, rs775931992, rs771701344, rs199849117, rs1555499234, rs759801838, rs1555499151, rs1555501632, rs765256758, rs1253995767, rs138308105, rs1557551678, rs779160677, rs752101663, rs759426055, rs1563974797, rs759377924, rs1366655422, rs754378340, rs34803727, rs370175770, rs1557785499, rs1557785503, rs781629728, rs1570980551, rs768527231, rs201945662, rs145337602, rs1596890176, rs139743444, rs780299444, rs1596883431, rs751409326, rs1274973729, rs146158333, rs747139582, rs753523115, rs148038173, rs374182921, rs761242621, rs751959432, rs1577430815, rs758035631, rs369360334, rs374055486, rs750710315, rs770513014, rs758683818, rs746818109, rs747249619, rs771326058, rs746623621, rs781209989, rs772241737 |
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Kidney disease |
Kidney Diseases |
rs74315342, rs749740335, rs757649673, rs112417755, rs35138315 |
21865292 |
Mitochondrial encephalopathy |
Mitochondrial encephalopathy |
rs199474671, rs199474672, rs776019250, rs35135520 |
|
Parathyroid adenoma |
Parathyroid Adenoma |
rs587776557 |
|
Ventricular fibrillation |
Ventricular Fibrillation |
rs137854604, rs587782933, rs190140598 |
|
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Conn syndrome |
Conn Syndrome |
|
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Diabetic ketoacidosis |
Diabetic Ketoacidosis |
|
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Focal seizures |
Focal seizures, afebril |
|
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Gitelman syndrome |
Gitelman Syndrome |
|
10988270, 22990302, 11168953, 8900229, 22009145, 12112667, 22169961, 9734597, 12008755, 15069170, 26099046, 10616841, 11940055, 10561751, 15687331, 8528245, 16429844, 17654016, 17873326, 8954067 |
Glomerulosclerosis |
Focal glomerulosclerosis |
|
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Gout |
Gout |
|
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Graves disease |
Graves Disease |
|
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Hashimoto disease |
Hashimoto Disease |
|
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Hypermagnesemia |
Hypermagnesemia |
|
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Hypokalemia |
Hypokalemic alkalosis |
|
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Iron deficiency anemia |
Iron deficiency anemia |
|
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Metabolic alkalosis |
Metabolic alkalosis |
|
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Nephritis |
Nephritis, Interstitial, Nephritis, Tubulointerstitial |
|
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Nocturia |
Nocturia |
|
|
Pancreatic neoplasm |
Pancreatic Neoplasm |
|
|
Pericardial effusion |
Pericardial effusion |
|
|
Raynaud phenomenon |
Raynaud Phenomenon |
|
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Renal glomerular disease |
Renal glomerular disease |
|
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Scleroderma |
Scleroderma, Systemic Scleroderma |
|
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Vascular diseases |
Vascular Diseases |
|
23348737 |
Vulval varices |
Varicosity |
|
|
|
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