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SHH (sonic hedgehog signaling molecule)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6469
Gene nameGene Name - the full gene name approved by the HGNC.
Sonic hedgehog signaling molecule
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
SHH
SynonymsGene synonyms aliases
HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC, TPT, TPTPS
ChromosomeChromosome number
7
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q36.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that is instrumental in patterning the early embryo. It has been implicated as the key inductive signal in patterning of the ventral neural tube, the anterior-posterior limb axis, and the ventral somites. Of three human protein
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28936675 C>T Pathogenic Upstream transcript variant, missense variant, genic upstream transcript variant, coding sequence variant
rs104894040 A>C,G Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs104894042 A>T Pathogenic Missense variant, intron variant, coding sequence variant
rs104894043 C>T Pathogenic Missense variant, intron variant, coding sequence variant
rs104894044 G>A Pathogenic Upstream transcript variant, coding sequence variant, genic upstream transcript variant, stop gained
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT017061 hsa-miR-335-5p Microarray 18185580
MIRT683052 hsa-miR-6887-3p HITS-CLIP 23706177
MIRT683051 hsa-miR-7108-3p HITS-CLIP 23706177
MIRT683050 hsa-miR-1471 HITS-CLIP 23706177
MIRT683049 hsa-miR-1292-3p HITS-CLIP 23706177
Transcription factors
Transcription factor Regulation Reference
PAX3 Unknown 20569257
SOX9 Unknown 20569257
STAT3 Activation 22554932
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0001569 Process Branching involved in blood vessel morphogenesis ISS
GO:0001570 Process Vasculogenesis ISS
GO:0001656 Process Metanephros development ISS
GO:0001658 Process Branching involved in ureteric bud morphogenesis ISS
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q15465
Protein name Sonic hedgehog protein (SHH) (EC 3.1.-.-) (HHG-1) (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) [Cleaved into: Sonic hedgehog protein N-product (ShhN) (Shh N-terminal processed signaling domains) (ShhNp)]
Protein function [Sonic hedgehog protein]: The C-terminal part of the sonic hedgehog protein precursor displays an autoproteolysis and a cholesterol transferase activity (By similarity). Both activities result in the cleavage of the full-length protein into two
PDB 3HO5 , 3M1N , 3MXW , 6DMY , 6E1H , 6N7G , 6N7H , 6N7K , 6OEV , 6PJV , 6RMG , 6RVD , 7E2I , 7MHZ , 7RHQ , 7URF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01085 HH_signal
24 184
Hedgehog amino-terminal signalling domain
Domain
PF01079 Hint
187 448
Hint module
Family
Sequence
Sequence length 462
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  Hedgehog signaling pathway
Axon guidance
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
Gastric cancer
  Hedgehog ligand biogenesis
Hh mutants that don't undergo autocatalytic processing are degraded by ERAD
Release of Hh-Np from the secreting cell
Ligand-receptor interactions
Activation of SMO
HHAT G278V abrogates palmitoylation of Hh-Np
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Agenesis of corpus callosum Agenesis of corpus callosum rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057, rs1384496494, rs1599017933
Asthma Asthma rs324981, rs121912630, rs150116809, rs4950928, rs708494, rs1581842283
Microphthalmia with coloboma Colobomatous microphthalmia, MICROPHTHALMIA, ISOLATED, WITH COLOBOMA 5 (disorder) rs387906910, rs587776950, rs794726861, rs794726862, rs755000701, rs1243762658, rs919662130, rs753315599, rs2091986259 12567406, 22897141, 12503095
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291, rs886041382, rs1057518991, rs1057518699, rs753254213, rs748294403, rs762552974, rs1135401795, rs1553121073, rs1553122926, rs1364690005, rs1554086554, rs1554210415, rs1554168326, rs1554776342, rs1553873247, rs1567860112, rs779009256, rs1557447255, rs1564568350, rs780011005, rs1597464953, rs1200336864, rs1569513017, rs1587459606, rs1570332505, rs748888652, rs1575155995, rs2087029320, rs1589669105, rs1601769604, rs1184981709, rs749201074
Unknown
Disease name Disease term dbSNP ID References
Alobar holoprosencephaly Alobar Holoprosencephaly 23264560, 15107988, 27585885, 17525797
Ambiguous genitalia Ambiguous Genitalia rs782562963
Arrhinencephaly Arhinencephaly 15107988, 27585885, 23264560, 17525797
Atherosclerotic parkinsonism Atherosclerotic Parkinsonism 11771942

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