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RNASEL (ribonuclease L)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6041
Gene nameGene Name - the full gene name approved by the HGNC.
Ribonuclease L
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
RNASEL
SynonymsGene synonyms aliases
PRCA1, RNS4
ChromosomeChromosome number
1
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q25.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a component of the interferon-regulated 2-5A system that functions in the antiviral and antiproliferative roles of interferons. Mutations in this gene have been associated with predisposition to prostate cancer and this gene is a candida
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs486907 C>T Risk-factor Non coding transcript variant, coding sequence variant, missense variant
rs74315364 C>A Conflicting-interpretations-of-pathogenicity, pathogenic, likely-pathogenic Stop gained, non coding transcript variant, coding sequence variant
rs74315365 C>T Pathogenic Missense variant, non coding transcript variant, initiator codon variant
rs146336238 G>A Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant, non coding transcript variant
rs147141911 C>A,T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant, non coding transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000902 hsa-miR-15a-5p Microarray 18362358
MIRT000901 hsa-miR-16-5p Microarray 18362358
MIRT019056 hsa-miR-335-5p Microarray 18185580
MIRT024876 hsa-miR-215-5p Microarray 19074876
MIRT026865 hsa-miR-192-5p Microarray 19074876
Transcription factors
Transcription factor Regulation Reference
BRCA1 Activation 15940267
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003723 Function RNA binding IBA 21873635
GO:0003723 Function RNA binding IDA 7514601
GO:0004521 Function Endoribonuclease activity NAS 7514601
GO:0004540 Function Ribonuclease activity IBA 21873635
GO:0004672 Function Protein kinase activity IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q05823
Protein name 2-5A-dependent ribonuclease (2-5A-dependent RNase) (EC 3.1.26.-) (Ribonuclease 4) (Ribonuclease L) (RNase L)
Protein function Endoribonuclease that functions in the interferon (IFN) antiviral response. In INF treated and virus infected cells, RNASEL probably mediates its antiviral effects through a combination of direct cleavage of single-stranded viral RNAs, inhibitio
PDB 1WDY , 4G8K , 4G8L , 4OAU , 4OAV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00023 Ank
58 89
Ankyrin repeat
Repeat
PF00023 Ank
167 200
Ankyrin repeat
Repeat
PF00069 Pkinase
368 524
Protein kinase domain
Domain
PF06479 Ribonuc_2-5A
592 720
Ribonuclease 2-5A
Family
Sequence
MESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW
TPLHNAVQMSREDIVELLLRHGADPVLRK
KNGATPFILAAIAGSVKLLKLFLSKGADVNE
CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH
VEVLKILLDEMGADVNACDN
MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK
TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD
CGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDWKPQSSHWGAALKDLHRIYRPMIGK
LKFFIDEKYKIADTSEGGIYLGFYEKQEVAVKTFCEGSPRAQREVSCLQSSRENSHLVTF
YGSESHRGHLFVCVTLCEQTLEACLDVHRGEDVENEEDEFARNVLSSIFKAVQELHLSCG
YTHQDLQPQNILIDSKKAAHLADFDKSIKWAGDPQEVKRDLEDL
GRLVLYVVKKGSISFE
DLKAQSNEEVVQLSPDEETKDLIHRLFHPGEHVRDCLSDLLGHPFFWTWESRYRTLRNVG
NESDIKTRKSESEILRLLQPGPSEHSKSFDKWTTKINECVMKKMNKFYEKRGNFYQNTVG
DLLKFIRNLGEHIDEEKHKKMKLKIGDPSLYFQKTFPDLVIYVYTKLQNTEYRKHFPQTH

SPNKPQCDGAGGASGLASPGC
Sequence length 741
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  NOD-like receptor signaling pathway
Hepatitis C
Influenza A
Herpes simplex virus 1 infection
  OAS antiviral response
Interferon alpha/beta signaling
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Multiple sclerosis Multiple Sclerosis rs104895219, rs483353022, rs483353023, rs483353028, rs483353029, rs483353024, rs483353030, rs3207617, rs483353031, rs483353032, rs483353033, rs483353034, rs483353035, rs483353036, rs483353039, rs483353038, rs61731956, rs568165874, rs767480544 23412934
Prostate cancer Malignant neoplasm of prostate, Prostate cancer, familial, Familial prostate cancer rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 27318894, 16114055, 17020975, 23141781, 28031937
Prostate cancer, hereditary PROSTATE CANCER, HEREDITARY, 1 rs387906327, rs193929331, rs74315365, rs10993994, rs397516896, rs794729219, rs121913349, rs587782641, rs1114167673, rs1597371666, rs2073394466
Unknown
Disease name Disease term dbSNP ID References
Neoplasms Neoplasms
Prostatic neoplasms Prostatic Neoplasms 27318894, 17020975, 16114055

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