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COG6 (component of oligomeric golgi complex 6)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
57511
Gene nameGene Name - the full gene name approved by the HGNC.
Component of oligomeric golgi complex 6
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
COG6
SynonymsGene synonyms aliases
CDG2L, COD2, SHNS
ChromosomeChromosome number
13
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
13q14.11
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes a subunit of the conserved oligomeric Golgi complex that is required for maintaining normal structure and activity of the Golgi apparatus. The encoded protein is organized with conserved oligomeric Golgi complex components 5, 7 and 8 int
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs200177031 C>T Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs387906959 G>C,T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs730882236 A>G Likely-pathogenic, pathogenic Intron variant
rs752232501 A>C,G Pathogenic Non coding transcript variant, initiator codon variant, missense variant
rs756826030 A>C,G Pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT640429 hsa-miR-551b-5p HITS-CLIP 23824327
MIRT640428 hsa-miR-34b-3p HITS-CLIP 23824327
MIRT640427 hsa-miR-5003-3p HITS-CLIP 23824327
MIRT640426 hsa-miR-6845-3p HITS-CLIP 23824327
MIRT640425 hsa-miR-7110-3p HITS-CLIP 23824327
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0005515 Function Protein binding IPI 27107012, 28514442, 32296183
GO:0006888 Process Endoplasmic reticulum to Golgi vesicle-mediated transport TAS
GO:0006891 Process Intra-Golgi vesicle-mediated transport IBA 21873635
GO:0015031 Process Protein transport IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q9Y2V7
Protein name Conserved oligomeric Golgi complex subunit 6 (COG complex subunit 6) (Component of oligomeric Golgi complex 6)
Protein function Required for normal Golgi function.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06419 COG6
56 656
Conserved oligomeric complex COG6
Family
Sequence
Sequence length 657
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
Reactome
    COPI-mediated anterograde transport
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Anemia Anemia rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505
Arthritis Systemic onset juvenile chronic arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470 23603761
Asthma Asthma rs324981, rs121912630, rs150116809, rs4950928, rs708494, rs1581842283 30929738
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039
Unknown
Disease name Disease term dbSNP ID References
Cerebral atrophy Cerebral atrophy
Congenital epicanthus Congenital Epicanthus
Dental enamel hypoplasia Dental Enamel Hypoplasia
Hyperkeratosis Hyperkeratosis

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