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SLC30A10 (solute carrier family 30 member 10)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
55532
Gene nameGene Name - the full gene name approved by the HGNC.
Solute carrier family 30 member 10
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
SLC30A10
SynonymsGene synonyms aliases
HMDPC, HMNDYT1, ZNT10, ZNT8, ZRC1, ZnT-10
ChromosomeChromosome number
1
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q41
SummarySummary of gene provided in NCBI Entrez Gene.
This gene is highly expressed in the liver and is inducible by manganese. Its protein product appears to be critical in maintaining manganese levels, and has higher specificity for manganese than zinc. Loss of function mutations appear to result in a pleo
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs281860289 CAC>- Pathogenic Non coding transcript variant, inframe deletion, coding sequence variant
rs281860290 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs281860291 A>G Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs281860292 T>- Pathogenic Non coding transcript variant, coding sequence variant, frameshift variant
rs770740586 G>A Pathogenic Non coding transcript variant, missense variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT030334 hsa-miR-26b-5p Microarray 19088304
MIRT717620 hsa-miR-3189-3p HITS-CLIP 19536157
MIRT717619 hsa-miR-635 HITS-CLIP 19536157
MIRT717618 hsa-miR-6774-5p HITS-CLIP 19536157
MIRT717617 hsa-miR-4424 HITS-CLIP 19536157
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005384 Function Manganese ion transmembrane transporter activity TAS
GO:0005385 Function Zinc ion transmembrane transporter activity IBA 21873635
GO:0005515 Function Protein binding IPI 26728129
GO:0005769 Component Early endosome IDA 26728129
GO:0005794 Component Golgi apparatus IEA
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID Q6XR72
Protein name Calcium/manganese antiporter SLC30A10 (Solute carrier family 30 member 10) (Zinc transporter 10) (ZnT-10)
Protein function Calcium:manganese antiporter of the plasma membrane mediating the efflux of intracellular manganese coupled to an active extracellular calcium exchange (PubMed:30755481). Required for intracellular manganese homeostasis, an essential cation for
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01545 Cation_efflux
11 307
Cation efflux family
Family
Sequence
Sequence length 485
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
Reactome
    Metal ion SLC transporters
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 27989131
Chronic obstructive pulmonary disease Chronic Obstructive Airway Disease rs2227956, rs1008438, rs1043618, rs562047, rs1061581, rs2763979, rs6457452, rs13147758, rs1828591, rs13118928 30804561
Hyperbilirubinemia Hyperbilirubinemia rs34993780, rs587784535, rs797046090, rs797046091
Hypermanganesemia with dystonia polycythemia and cirrhosis Hypermanganesemia with Dystonia Polycythemia and Cirrhosis rs281860285, rs281860284, rs281860288, rs281860287, rs281860292 29179235, 22926781, 22341972, 22341971, 25778823, 27604308, 25319704
Unknown
Disease name Disease term dbSNP ID References
Central hypothyroidism Central hypothyroidism 28860195
Cirrhosis Cirrhosis rs119465999, rs144369314, rs8056684, rs112053857, rs75998507
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome
Dysarthria Dysarthria

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