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WNT4 (Wnt family member 4)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
54361
Gene nameGene Name - the full gene name approved by the HGNC.
Wnt family member 4
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
WNT4
SynonymsGene synonyms aliases
SERKAL, WNT-4
ChromosomeChromosome number
1
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p36.12
SummarySummary of gene provided in NCBI Entrez Gene.
The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryog
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121908650 T>C Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs121908651 G>A Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs121908652 G>A Pathogenic Missense variant, coding sequence variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006385 hsa-miR-29c-3p Luciferase reporter assay 21436257
MIRT006385 hsa-miR-29c-3p Luciferase reporter assay 21436257
MIRT006385 hsa-miR-29c-3p Luciferase reporter assay 21436257
MIRT438738 hsa-miR-16-5p qRT-PCR, Western blot, YFP expression 24130753
MIRT438608 hsa-miR-24-3p Luciferase reporter assay 23027131
Transcription factors
Transcription factor Regulation Reference
EGR1 Repression 18281035
EGR1 Unknown 21436631
RUNX3 Repression 22171134
TCF4 Unknown 21436631
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0001822 Process Kidney development IEP 15312687
GO:0001837 Process Epithelial to mesenchymal transition IEP 12841867
GO:0001838 Process Embryonic epithelial tube formation IEA
GO:0001889 Process Liver development IEP 15312687
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P56705
Protein name Protein Wnt-4
Protein function Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Plays an important role in the embryonic development of the urogenital tract and the lung (PubMed:15317892, PubMed:16959810, PubMed:18179883, PubMed:18182450)
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00110 wnt
45 351
wnt family
Family
Sequence
Sequence length 351
Interactions View interactions
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
 
KEGG
 
Reactome
  mTOR signaling pathway
Wnt signaling pathway
Axon guidance
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Melanogenesis
Thyroid hormone signaling pathway
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
  WNT ligand biogenesis and trafficking
PCP/CE pathway
Associated diseases
Causal
Disease name Disease term dbSNP ID References
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852, rs121917853, rs121917854, rs121917855, rs121917859, rs121917861, rs267606873, rs267606872, rs267606985, rs267606986, rs267606987, rs267606988, rs28933082, rs397514519, rs869025613, rs869025614, rs886039878, rs1553540620, rs1057518333, rs1948841937, rs1948868228, rs1948842030, rs1948842142
Congenital diaphragmatic hernia Congenital diaphragmatic hernia rs121908602, rs121908604, rs864309713, rs780263938, rs756636036, rs775394591
Kidney disease Kidney Diseases rs74315342, rs749740335, rs757649673, rs112417755, rs35138315 11832423
Mullerian aplasia and hyperandrogenism Mullerian Aplasia and Hyperandrogenism, Müllerian aplasia and hyperandrogenism rs121908650, rs121908652, rs121908653 15317892, 18182450, 16959810
Unknown
Disease name Disease term dbSNP ID References
Acne Acne
Cubitus valgus Acquired cubitus valgus
Adrenal gland agenesis Congenital absence of adrenal gland
Pulmonary hypoplasia Congenital hypoplasia of lung rs1569032634

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