PML (PML nuclear body scaffold)
|
Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
5371 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
PML nuclear body scaffold |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
PML |
SynonymsGene synonyms aliases
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MYL, PP8675, RNF71, TRIM19 |
ChromosomeChromosome number
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15 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
15q24.1 |
SummarySummary of gene provided in NCBI Entrez Gene.
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The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This phosphoprotein localizes to nuclear bodies wh |
miRNAmiRNA information provided by mirtarbase database.
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Transcription factors
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Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0000781 |
Component |
Chromosome, telomeric region |
IDA |
26119943 |
GO:0000785 |
Component |
Chromatin |
IBA |
21873635 |
GO:0000792 |
Component |
Heterochromatin |
IEA |
|
GO:0001666 |
Process |
Response to hypoxia |
IDA |
16915281 |
GO:0001932 |
Process |
Regulation of protein phosphorylation |
ISS |
|
GO:0003677 |
Function |
DNA binding |
IEA |
|
GO:0004842 |
Function |
Ubiquitin-protein transferase activity |
IBA |
21873635 |
GO:0005515 |
Function |
Protein binding |
IPI |
9294197, 10669754, 10684855, 11259576, 11948183, 12006491, 12529400, 12915590, 14517282, 14976184, 15195100, 15467728, 15626733, 16322229, 16873060, 16915281, 17036045, 18298799, 18511908, 20389280, 20625391, 20639899, 20832753, 21057547, 21803845, 21840486, 21988832, 21994459, 2200 |
GO:0005634 |
Component |
Nucleus |
IDA |
9412458, 22274616 |
GO:0005654 |
Component |
Nucleoplasm |
IBA |
21873635 |
GO:0005654 |
Component |
Nucleoplasm |
IDA |
12915590 |
GO:0005654 |
Component |
Nucleoplasm |
TAS |
|
GO:0005730 |
Component |
Nucleolus |
IDA |
15195100 |
GO:0005737 |
Component |
Cytoplasm |
IDA |
18298799 |
GO:0005829 |
Component |
Cytosol |
ISS |
|
GO:0005829 |
Component |
Cytosol |
TAS |
|
GO:0006355 |
Process |
Regulation of transcription, DNA-templated |
IMP |
23007646 |
GO:0006606 |
Process |
Protein import into nucleus |
IEA |
|
GO:0006919 |
Process |
Activation of cysteine-type endopeptidase activity involved in apoptotic process |
IEA |
|
GO:0006977 |
Process |
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest |
ISS |
|
GO:0007050 |
Process |
Cell cycle arrest |
IBA |
21873635 |
GO:0007179 |
Process |
Transforming growth factor beta receptor signaling pathway |
IEA |
|
GO:0007182 |
Process |
Common-partner SMAD protein phosphorylation |
IEA |
|
GO:0008270 |
Function |
Zinc ion binding |
IEA |
|
GO:0008285 |
Process |
Negative regulation of cell population proliferation |
IMP |
12006491 |
GO:0008630 |
Process |
Intrinsic apoptotic signaling pathway in response to DNA damage |
IBA |
21873635 |
GO:0008631 |
Process |
Intrinsic apoptotic signaling pathway in response to oxidative stress |
IEA |
|
GO:0009411 |
Process |
Response to UV |
IEA |
|
GO:0010332 |
Process |
Response to gamma radiation |
IEA |
|
GO:0010522 |
Process |
Regulation of calcium ion transport into cytosol |
ISS |
|
GO:0010761 |
Process |
Fibroblast migration |
IEA |
|
GO:0016032 |
Process |
Viral process |
IEA |
|
GO:0016363 |
Component |
Nuclear matrix |
IEA |
|
GO:0016525 |
Process |
Negative regulation of angiogenesis |
IMP |
16915281 |
GO:0016567 |
Process |
Protein ubiquitination |
IEA |
|
GO:0016605 |
Component |
PML body |
IBA |
21873635 |
GO:0016605 |
Component |
PML body |
IDA |
9412458, 9448006, 11331580, 12917339, 15195100, 17081985, 22155184, 22869143, 23007646, 23431171 |
GO:0016605 |
Component |
PML body |
IDA |
10910364 |
GO:0016605 |
Component |
PML body |
TAS |
9230084 |
GO:0030099 |
Process |
Myeloid cell differentiation |
IEA |
|
GO:0030155 |
Process |
Regulation of cell adhesion |
IEA |
|
GO:0030308 |
Process |
Negative regulation of cell growth |
IDA |
9448006 |
GO:0030578 |
Process |
PML body organization |
IBA |
21873635 |
GO:0030578 |
Process |
PML body organization |
IMP |
17081985 |
GO:0031625 |
Function |
Ubiquitin protein ligase binding |
IPI |
12915590 |
GO:0031901 |
Component |
Early endosome membrane |
IEA |
|
GO:0032183 |
Function |
SUMO binding |
IPI |
17081985 |
GO:0032206 |
Process |
Positive regulation of telomere maintenance |
IMP |
26119943 |
GO:0032469 |
Process |
Endoplasmic reticulum calcium ion homeostasis |
ISS |
|
GO:0032691 |
Process |
Negative regulation of interleukin-1 beta production |
IEA |
|
GO:0032922 |
Process |
Circadian regulation of gene expression |
ISS |
|
GO:0034097 |
Process |
Response to cytokine |
IDA |
9412458 |
GO:0042406 |
Component |
Extrinsic component of endoplasmic reticulum membrane |
ISS |
|
GO:0042752 |
Process |
Regulation of circadian rhythm |
ISS |
|
GO:0042771 |
Process |
Intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator |
ISS |
|
GO:0042803 |
Function |
Protein homodimerization activity |
IPI |
9230084 |
GO:0043153 |
Process |
Entrainment of circadian clock by photoperiod |
ISS |
|
GO:0043161 |
Process |
Proteasome-mediated ubiquitin-dependent protein catabolic process |
IDA |
22406621 |
GO:0045087 |
Process |
Innate immune response |
IDA |
18248090 |
GO:0045165 |
Process |
Cell fate commitment |
IEA |
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GO:0045892 |
Process |
Negative regulation of transcription, DNA-templated |
IDA |
9448006 |
GO:0045893 |
Process |
Positive regulation of transcription, DNA-templated |
IBA |
21873635 |
GO:0046332 |
Function |
SMAD binding |
IEA |
|
GO:0048146 |
Process |
Positive regulation of fibroblast proliferation |
IEA |
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GO:0048384 |
Process |
Retinoic acid receptor signaling pathway |
IEA |
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GO:0051457 |
Process |
Maintenance of protein location in nucleus |
IDA |
17332504 |
GO:0051607 |
Process |
Defense response to virus |
IEA |
|
GO:0060333 |
Process |
Interferon-gamma-mediated signaling pathway |
TAS |
|
GO:0060444 |
Process |
Branching involved in mammary gland duct morphogenesis |
IEA |
|
GO:0065003 |
Process |
Protein-containing complex assembly |
IDA |
12915590 |
GO:0070059 |
Process |
Intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
IEA |
|
GO:0071353 |
Process |
Cellular response to interleukin-4 |
IEA |
|
GO:0090398 |
Process |
Cellular senescence |
IDA |
22002537, 22117195, 23431171 |
GO:0097191 |
Process |
Extrinsic apoptotic signaling pathway |
IEA |
|
GO:0140037 |
Function |
Sumo-dependent protein binding |
IPI |
17081986 |
GO:1901796 |
Process |
Regulation of signal transduction by p53 class mediator |
TAS |
|
GO:1902187 |
Process |
Negative regulation of viral release from host cell |
IDA |
18248090 |
GO:1990830 |
Process |
Cellular response to leukemia inhibitory factor |
IEA |
|
GO:2000059 |
Process |
Negative regulation of ubiquitin-dependent protein catabolic process |
IMP |
15195100 |
GO:2000779 |
Process |
Regulation of double-strand break repair |
IMP |
21639834 |
GO:2001238 |
Process |
Positive regulation of extrinsic apoptotic signaling pathway |
IMP |
21803845 |
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Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
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Protein
|
UniProt ID |
P29590 |
Protein name |
Protein PML (E3 SUMO-protein ligase PML) (EC 2.3.2.-) (Promyelocytic leukemia protein) (RING finger protein 71) (RING-type E3 SUMO transferase PML) (Tripartite motif-containing protein 19) (TRIM19) |
Protein function |
Functions via its association with PML-nuclear bodies (PML-NBs) in a wide range of important cellular processes, including tumor suppression, transcriptional regulation, apoptosis, senescence, DNA damage response, and viral defense mechanisms. A |
PDB |
1BOR
,
2MVW
,
2MWX
,
4WJN
,
4WJO
,
5YUF
,
6IMQ
,
6UYO
,
6UYP
,
6UYQ
,
6UYR
,
6UYS
,
6UYT
,
6UYU
,
6UYV
,
8DJH
,
8DJI
,
8J25
,
8J2P
,
8YTC
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Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF00643 |
zf-B_box |
124 → 166 |
B-box zinc finger |
Domain |
PF12126 |
DUF3583 |
240 → 570 |
Protein of unknown function (DUF3583) |
Family |
|
Sequence |
|
Sequence length |
882 |
Interactions |
View interactions |
PathwaysPathway information has different metabolic/signaling pathways associated with genes. Each record is hyperlinked to a complete information page which also includes links to the KEGG/Reactome pathway database.
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Associated diseases
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Causal |
Disease name |
Disease term |
dbSNP ID |
References |
Anemia |
Anemia |
rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs121908584, rs80338697, rs80338699, rs120074166, rs120074167, rs1050828, rs74575103, rs137852314, rs5030868, rs137852316, rs137852317, rs137852318, rs137852319, rs137852320, rs137852321, rs137852322, rs137852323, rs137852324, rs72554665, rs387906468, rs5030872, rs137852326, rs137852333, rs137852327, rs137852328, rs137852329, rs137852330, rs137852331, rs137852332, rs137852334, rs137852335, rs137852336, rs137852339, rs76645461, rs137852340, rs137852341, rs78478128, rs137852343, rs137852344, rs137852345, rs587776730, rs137852346, rs137852347, rs137852349, rs2070404412, rs2070350038, rs2070350009, rs137852303, rs137852304, rs33946267, rs34378160, rs33933298, rs11549407, rs35724775, rs34598529, rs41469945, rs267607201, rs80338694, rs80338696, rs387907018, rs398123546, rs78365220, rs587777100, rs587777101, rs483352840, rs869312752, rs765487627, rs1557229599, rs1557230040, rs1555524842, rs782090947, rs1358275550, rs1557229736, rs1557230573, rs1556323334, rs1233124208, rs1293528130, rs146864395, rs1595503440, rs1603411214, rs137852325, rs1575247302, rs1603411177, rs1336651679, rs782322505 |
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Exfoliation syndrome |
Exfoliation Syndrome |
rs1048661, rs2165241 |
24938310 |
Glioblastoma |
Glioblastoma, Glioblastoma Multiforme |
rs121913500, rs886042842, rs1555138291, rs1558518449, rs1567176006, rs1558650888 |
23440206 |
Hypofibrinogenemia |
Hypofibrinogenemia |
rs121913087, rs121913088, rs587776837, rs121909616, rs121909625, rs121909608, rs121909607, rs146387238, rs1578795296, rs1214070111, rs776817952, rs762964798, rs121909606, rs1414035000, rs1310452604 |
|
Myocardial infarction |
Myocardial Infarction |
rs12316150, rs41303970, rs909253, rs7291467, rs2234693 |
21211798 |
Myopia |
Myopia, Degenerative |
rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805, rs782555528, rs1554862601, rs1586620121, rs1387950081, rs2051026773, rs1422332023 |
23049088 |
Neutropenia |
Neutropenia |
rs879253882 |
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Paget disease |
Osteitis Deformans, Paget Disease |
rs796051862, rs796051869, rs796051870, rs796052213, rs1555767678, rs869025582 |
21623375 |
Pancytopenia |
Pancytopenia |
rs869312883, rs770551610, rs1131690788, rs530073586, rs374333820 |
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Prostate cancer |
Malignant neoplasm of prostate |
rs121909139, rs121909140, rs121909141, rs121909142, rs121909143, rs606231169, rs606231170, rs137852584, rs137852578, rs137852580, rs137852581, rs137852582 |
29335545 |
Schizophrenia |
Schizophrenia |
rs74315508, rs74315509, rs13447324, rs1558507406, rs387906932, rs387906933, rs863223354, rs863223355, rs776061422, rs863223349, rs748809996, rs759748655, rs863223353, rs863223350, rs863223356, rs781821239, rs863223348, rs863223346, rs863223347, rs863223351, rs863223352, rs61734270, rs797045205, rs869312829, rs869312830, rs770913157, rs869312832, rs869312831, rs781720548, rs1262969313 |
21822266 |
|
Unknown |
Disease name |
Disease term |
dbSNP ID |
References |
Anorexia |
Anorexia |
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Diffuse alveolar hemorrhage |
Diffuse alveolar hemorrhage |
|
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Disseminated intravascular coagulation |
Disseminated Intravascular Coagulation |
|
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Fibrinogen deficiency |
Fibrinogen Deficiency |
|
|
Gangrene |
Gangrene |
|
|
Giant cell glioblastoma |
Giant Cell Glioblastoma |
|
23440206 |
Leukopenia |
Leukopenia |
|
|
Promyelocytic leukemia |
Acute Promyelocytic Leukemia |
|
19887701, 16935935, 23208507, 10742073, 16788101, 16835227, 10942371, 19029980, 17649720, 21613260, 19035177, 22213200, 14706140, 16891316, 21345080, 26285909, 17294898, 8616088, 19884644, 23734343, 26728337 |
Prostatic neoplasms |
Prostatic Neoplasms |
|
29335545 |
Stevens-johnson syndrome |
Toxic Epidermal Necrolysis, Stevens-Johnson Syndrome, Drug-Induced Stevens Johnson Syndrome, Mycoplasma-Induced Stevens-Johnson Syndrome, Stevens-Johnson Syndrome Toxic Epidermal Necrolysis Spectrum |
|
25811541 |
Stomatitis |
Stomatitis |
|
|
Treatment related secondary malignancy |
Treatment related secondary malignancy |
|
19884644 |
|
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